View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-44 (Length: 65)
Name: NF4291-Insertion-44
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-44 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 59; Significance: 9e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 3156313 - 3156375
Alignment:
| Q |
3 |
cacgtaggtattatccaaagtgagcaattcacttcagagagtaaagtgagtaatgtcaataat |
65 |
Q |
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| T |
3156313 |
cacgtaggtattatccaaagtgagcaattcacttcagagagtaaagggagtaatgtcaataat |
3156375 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 36089844 - 36089802
Alignment:
| Q |
19 |
aaagtgagcaattcacttcagagagtaaagtgagtaatgtcaa |
61 |
Q |
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| T |
36089844 |
aaagtgagcaattcactttagagagtaaagtgaataatttcaa |
36089802 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 23499351 - 23499392
Alignment:
| Q |
16 |
tccaaagtgagcaattcacttcagagagtaaagtgagtaatg |
57 |
Q |
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| T |
23499351 |
tccaaagtgagtaattcactttagagagtaaagtgagtaatg |
23499392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32129618 - 32129654
Alignment:
| Q |
19 |
aaagtgagcaattcacttcagagagtaaagtgagtaa |
55 |
Q |
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| T |
32129618 |
aaagtgagcaattcactttagagagtgaagtgagtaa |
32129654 |
T |
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