View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-54 (Length: 149)
Name: NF4291-Insertion-54
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-54 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 17534803 - 17534705
Alignment:
| Q |
46 |
gttattgttattataattggtgtacacacccgttcctttgtatgggtgttcatcggtaatttatttttgtttgttttgggtggtgcctccctttattag |
144 |
Q |
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| T |
17534803 |
gttattgttattatgattggtggacacacccgctccattgtatgagtgttcatcagaaatttatttttgtttgttttgggtggtgcctccctttattag |
17534705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 17534906 - 17534847
Alignment:
| Q |
46 |
gttattgttattataattggtgtacacacccgttcctttgtatgggtgttcatcggtaat |
105 |
Q |
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| T |
17534906 |
gttattgttattatgattggtggacacgcccgctccattgtatgggtgttcatcgataat |
17534847 |
T |
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Target: chr8 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 3773081 - 3772988
Alignment:
| Q |
47 |
ttattgttattataattggtgtacacacccgttcctttgtatgggtgttcatcggtaatttatttttgtttgttttgggtggtgcctcccttta |
140 |
Q |
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| T |
3773081 |
ttattgttattatgattggtggaaacacccgctcctatgtatgggtgttcacccgtaatctattttcgcttgtattgggtggtgcctccattta |
3772988 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 39406281 - 39406338
Alignment:
| Q |
42 |
ttctgttattgttattataattggtgtacacacccgttcctttgtatgggtgttcatc |
99 |
Q |
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| T |
39406281 |
ttctgttattgttattatgattggtggacacatccgttgctatgtatgggtgttcatc |
39406338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 35272739 - 35272674
Alignment:
| Q |
47 |
ttattgttattataattggtgtacacacccgttcctttgtatgggtgttcatcggtaatttatttt |
112 |
Q |
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| T |
35272739 |
ttatagttattatgattggtggaaacacccgttactttgtatgggtgtttaccggtaacttatttt |
35272674 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 14570958 - 14571024
Alignment:
| Q |
47 |
ttattgttattataattggtgtacacacccgttcctttgtatgggtgttcatcggtaatttattttt |
113 |
Q |
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| T |
14570958 |
ttattgttattatgattggtggacaaatccactcctttgtatgggtgttcacgagtaatttattttt |
14571024 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 32446506 - 32446572
Alignment:
| Q |
47 |
ttattgttattataattggtgtacacacccgttcctttgtatgggtgttcatcggtaatttattttt |
113 |
Q |
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| T |
32446506 |
ttattgtttttatgactggtggacacatccgctcctttgtatgggagtgcatcagtaatttattttt |
32446572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 26152141 - 26152241
Alignment:
| Q |
48 |
tattgttattataattggtgtacacacccgttcctttgtatgggtgttcatcggtaatttatttttgtttgttttgggtggtgcctccctttattaggca |
147 |
Q |
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| T |
26152141 |
tattgttcttatgattggtggaaacaccccatcctttgtatgggtgcttaagggtaatttcttttcgattgttttgaatggtgtctctctttatttggca |
26152240 |
T |
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| Q |
148 |
c |
148 |
Q |
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| T |
26152241 |
c |
26152241 |
T |
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