View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-56 (Length: 134)
Name: NF4291-Insertion-56
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-56 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 5e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 13051864 - 13051993
Alignment:
| Q |
5 |
ggggtctccacattgagggtcacagcaccatgttttgtactgcactcaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaa |
104 |
Q |
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| T |
13051864 |
ggggtctacacattgagggtcacagcaccatgttttgtactgcactgaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaa |
13051963 |
T |
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| Q |
105 |
tgcttgtgcaagagcaagaaactggattcg |
134 |
Q |
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| T |
13051964 |
tgcttgtgcaagagcaagaaactggattcg |
13051993 |
T |
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Target: chr4 (Bit Score: 83; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 162155 - 162273
Alignment:
| Q |
16 |
attgagggtcacagcaccatgttttgtactgcactcaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaatgcttgtgcaa |
115 |
Q |
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| T |
162155 |
attgagggtcacagtaccatgttttgtactgcactcaactatatatgtatgcggattcttggagaaggacctgatggaggtcaagacaatgcttgtgcta |
162254 |
T |
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| Q |
116 |
gagcaagaaactggattcg |
134 |
Q |
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| T |
162255 |
gagccagaaactggattcg |
162273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 102972 - 103093
Alignment:
| Q |
13 |
cacattgagggtcacagcaccatgttttgtactgcactcaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaatgcttgtg |
112 |
Q |
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| T |
102972 |
cacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaaggacctgatggcggtcaagacaatgcttgtg |
103071 |
T |
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| Q |
113 |
caagagcaagaaactggattcg |
134 |
Q |
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| T |
103072 |
ctagagccagaaactggattcg |
103093 |
T |
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Target: chr3 (Bit Score: 73; Significance: 9e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 12138291 - 12138171
Alignment:
| Q |
13 |
cacattgagggtcacagcaccatgttttgtactgcactcaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaatgcttgtg |
112 |
Q |
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| T |
12138291 |
cacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggagaagggcctaatggaggtcaagacaatgcttgtg |
12138192 |
T |
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| Q |
113 |
caagagcaagaaactggattc |
133 |
Q |
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| T |
12138191 |
caagagcaagaaagtggattc |
12138171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 66; Significance: 1e-29; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 93403 - 93282
Alignment:
| Q |
13 |
cacattgagggtcacagcaccatgttttgtactgcactcaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaatgcttgtg |
112 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||| ||||| || | ||||||||| |||| || ||||| |||||| |||||||||||| |
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| T |
93403 |
cacattgagggtcacagcatcatgttttctactgcactcaactacatatgtatgcggattcttggacaaggtcctgatggcggtcaaaacaatgcttgtg |
93304 |
T |
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| Q |
113 |
caagagcaagaaactggattcg |
134 |
Q |
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| T |
93303 |
ctagagcaagacactggattcg |
93282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 5692766 - 5692652
Alignment:
| Q |
19 |
gagggtcacagcaccatgttttgtactgcactcaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaatgcttgtgcaagag |
118 |
Q |
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| T |
5692766 |
gagggtcacagtatcatgttttgtacagtactcaactacatatgcatgcgaatacttggagaaggtccaaatggaggtaaagaaaatgcttgtgctaaag |
5692667 |
T |
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| Q |
119 |
caagaaactggattc |
133 |
Q |
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| T |
5692666 |
caagaaaatggattc |
5692652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 5671020 - 5670906
Alignment:
| Q |
19 |
gagggtcacagcaccatgttttgtactgcactcaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaatgcttgtgcaagag |
118 |
Q |
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| T |
5671020 |
gagggtcacaatatcatgttttgtactgtactcaactacatatgtatgcgaatacttggagaaggtccaaatggaggtaaagaaaatgcttgtgctaaag |
5670921 |
T |
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| Q |
119 |
caagaaactggattc |
133 |
Q |
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| T |
5670920 |
caagaaaatggattc |
5670906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 5723110 - 5722996
Alignment:
| Q |
19 |
gagggtcacagcaccatgttttgtactgcactcaactatatatgcctgagaattcttggagaagggccggatggaggtcaagacaatgcttgtgcaagag |
118 |
Q |
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||||||||||| | |||||||||||| | ||| ||||| |||||| || |||| ||||||||||| || |||||||| |||| ||||||||||| | || |
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| T |
5723110 |
gagggtcacagtatcatgttttgtaccgtacttaactacatatgcatgcgaatacttggagaaggtccaaatggaggtaaagaaaatgcttgtgctaaag |
5723011 |
T |
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| Q |
119 |
caagaaactggattc |
133 |
Q |
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||||||| ||||||| |
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| T |
5723010 |
caagaaaatggattc |
5722996 |
T |
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