View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-65 (Length: 217)
Name: NF4291-Insertion-65
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-65 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 35830083 - 35830296
Alignment:
| Q |
1 |
tctaaaacatggattgtcaccaaaatcttggacagactatcttcatctcactgttggaggcactctttcgaatgctggaataagtggacaagcttttagg |
100 |
Q |
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| T |
35830083 |
tctaaaacatggattggcaccaaaatcttggacagactatcttcatctcactgttggaggcactctttcgaatgctggaataagtggacaagcttttagg |
35830182 |
T |
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| Q |
101 |
catggacctcagattaataacatcttccagctggaagttgtcacaggtaatgtgattttagccaaacacgcaatttctttgaagggatggtttagtttta |
200 |
Q |
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| T |
35830183 |
catggacctcagattaataacatcttccagctggaaattgtcacaggtaatgtgattttagccaaacacataatttctttgaagggatggtttagtttta |
35830282 |
T |
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| Q |
201 |
g-ttctttataatg |
213 |
Q |
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| |||||||||||| |
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| T |
35830283 |
gtttctttataatg |
35830296 |
T |
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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 54406 - 54511
Alignment:
| Q |
9 |
atggattgtcaccaaaatcttggacagactatcttcatctcactgttggaggcactctttcgaatgctggaataagtggacaagcttttaggcatggacc |
108 |
Q |
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| T |
54406 |
atgggttggcaccaagatcatggacagattatttgcatctaacagttggtggtactctgtccaatgctggtgttagtggacaagcatttaagcatggtcc |
54505 |
T |
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| Q |
109 |
tcagat |
114 |
Q |
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| T |
54506 |
tcagat |
54511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 14785324 - 14785219
Alignment:
| Q |
9 |
atggattgtcaccaaaatcttggacagactatcttcatctcactgttggaggcactctttcgaatgctggaataagtggacaagcttttaggcatggacc |
108 |
Q |
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|||| ||| |||||| ||| |||||||| ||| | ||||| || ||||| || ||||| || |||||||| | ||||||||||| |||| |||||| || |
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| T |
14785324 |
atgggttggcaccaagatcatggacagattatttgcatctaacagttggtggtactctgtccaatgctggtgttagtggacaagcatttaagcatggtcc |
14785225 |
T |
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| Q |
109 |
tcagat |
114 |
Q |
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|||||| |
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| T |
14785224 |
tcagat |
14785219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 52443479 - 52443540
Alignment:
| Q |
26 |
tcttggacagactatcttcatctcactgttggaggcactctttcgaatgctggaataagtgg |
87 |
Q |
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|||||||| ||||||||| | ||||| |||||||| || ||||| ||||||||||| ||||| |
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| T |
52443479 |
tcttggactgactatctttacctcacggttggaggaacactttccaatgctggaattagtgg |
52443540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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