View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-7 (Length: 67)
Name: NF4291-Insertion-7
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-7 |
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| [»] scaffold0741 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: scaffold0741 (Bit Score: 46; Significance: 5e-18; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 5248 - 5184
Alignment:
| Q |
2 |
agttttaactggcgaatccaaacctgagcgtgagtgtttcgctgcgtgtgcatattggaaatcctt |
67 |
Q |
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| T |
5248 |
agttctaacaggcgaatccaaacctgagcgtgagtgtttcgctgcgtatgcatatt-gaaatcctt |
5184 |
T |
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Target: chr7 (Bit Score: 46; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 26176390 - 26176326
Alignment:
| Q |
2 |
agttttaactggcgaatccaaacctgagcgtgagtgtttcgctgcgtgtgcatattggaaatcctt |
67 |
Q |
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| T |
26176390 |
agttctaacaggcgaatccaaacctgagcgtgagtgtttcgctgcgtatgcatatt-gaaatcctt |
26176326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 27540387 - 27540443
Alignment:
| Q |
2 |
agttttaactggcgaatccaaacctgagcgtgagtgtttcgctgcgtgtgcatattg |
58 |
Q |
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| T |
27540387 |
agttctaacaggcgaatccaaacctgagcttgagtgtttcgctgcgtgtgcatattg |
27540443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 20305216 - 20305280
Alignment:
| Q |
2 |
agttttaactggcgaatccaaacctgagcgtgagtgtttcgctgcgtgtgcatattggaaatcctt |
67 |
Q |
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| T |
20305216 |
agttctaacaggcgaatccaaacctgagcgtgagtgttttgctgcgtatgcatatt-gaaatcctt |
20305280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 7653859 - 7653795
Alignment:
| Q |
2 |
agttttaactggcgaatccaaacctgagcgtgagtgtttcgctgcgtgtgcatattggaaatcctt |
67 |
Q |
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| T |
7653859 |
agttctaacaggcgaatccaaacttgagcatgagtgtttcgctgcgtgtgcatatt-gaaatcctt |
7653795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 37635943 - 37636007
Alignment:
| Q |
2 |
agttttaactggcgaatccaaacctgagcgtgagtgtttcgctgcgtgtgcatattggaaatcctt |
67 |
Q |
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| T |
37635943 |
agttctaacaggcgaatccaaacatgagcgtgagtgtttcgctgcgtatgcatatt-gaaatcctt |
37636007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 16600147 - 16600211
Alignment:
| Q |
2 |
agttttaactggcgaatccaaacctgagcgtgagtgtttcgctgcgtgtgcatattggaaatcctt |
67 |
Q |
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| T |
16600147 |
agttctaacaggcaaatccaaacctgagcgtgagtgtttcgctgtgtgtgcatatt-gaaatcctt |
16600211 |
T |
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Target: scaffold0065 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 41232 - 41168
Alignment:
| Q |
2 |
agttttaactggcgaatccaaacctgagcgtgagtgtttcgctgcgtgtgcatattggaaatcctt |
67 |
Q |
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| T |
41232 |
agttctaacaggcgaatccaaacctgagtgagagtgtttcgctgcgtatgcatatt-gaaatcctt |
41168 |
T |
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