View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-72 (Length: 228)
Name: NF4291-Insertion-72
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-72 |
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| [»] chr4 (8 HSPs) |
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| [»] scaffold0048 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 24698331 - 24698559
Alignment:
| Q |
1 |
gtatgaactaaagggacaaacctgatgcataaatgcattttagtgacatctaataattattttagttttgatgaagagtttcttatggcnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24698331 |
gtatgaactaaagggacaaacatgatgcataaatgcattttagtgacatctaataattattttagttttgatgaagagtttcttatggcaaaaaaaatat |
24698430 |
T |
|
| Q |
101 |
nnnn--ctattgcattgatgtaaacattccatgggnnnnnnngttatataaagtgttcaagtaattatacatttgctatctgcaaaaagtgaaaataaaa |
198 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24698431 |
taaaaactattgcattgatgtaaacattccatgggtttttttgttatataaagtgttcaagtaattatacatttgctatctgc-aaaagtgaaaataaaa |
24698529 |
T |
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| Q |
199 |
tggctgaaattctcaaatttgtttatattg |
228 |
Q |
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|||||||||||||||| ||||||||||||| |
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| T |
24698530 |
tggctgaaattctcaagtttgtttatattg |
24698559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 24710182 - 24710409
Alignment:
| Q |
1 |
gtatgaactaaagggacaaacctgatgcataaatgcattttagtgacatctaataattattttagttttgatgaagagtttcttatggc--nnnnnnnnn |
98 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| | |
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| T |
24710182 |
gtatgaactatagggacaaatatgatgcataaatgcattttagtgacatctaataattattttagttttaatgaagaatttcgtatgacaaaaaagttat |
24710281 |
T |
|
| Q |
99 |
nnnnnnctattgcattgatgtaaacattccatgggnnnnnnngttatataaagtgttcaagtaattatacatttgctatctgcaaaaagtgaaaataaaa |
198 |
Q |
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|||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||| |
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| T |
24710282 |
taaaatctattgaattgatgtaaacattccat-ggattttttgttatataaagtgttcaaacaattatacatttgctatatgc-aaaggtgaaaataaaa |
24710379 |
T |
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| Q |
199 |
tggctgaaattctcaaatttgtttatattg |
228 |
Q |
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|| || ||||||||||||| |||||||||| |
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| T |
24710380 |
tgactcaaattctcaaattggtttatattg |
24710409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 24603613 - 24603554
Alignment:
| Q |
2 |
tatgaactaaagggacaaacctgatgcataaatgcattttagtgacatctaataattatt |
61 |
Q |
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|||||||||||||||||||| ||| |||||||| | |||||||| |||||||||||||| |
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| T |
24603613 |
tatgaactaaagggacaaacatgaatcataaatgtactttagtgatatctaataattatt |
24603554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 24660865 - 24660806
Alignment:
| Q |
2 |
tatgaactaaagggacaaacctgatgcataaatgcattttagtgacatctaataattatt |
61 |
Q |
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|||||||||||||||||||| |||| |||| ||| | |||||||| |||||||||||||| |
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| T |
24660865 |
tatgaactaaagggacaaacatgatacatacatgtactttagtgatatctaataattatt |
24660806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 24579597 - 24579513
Alignment:
| Q |
142 |
ttatataaagtgttcaagtaattatacatttgctatctgcaaaaagtgaaaataaaatggctgaaattctcaaatttgtttatattg |
228 |
Q |
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|||||||||||||||| | || |||||||||| ||| ||||| ||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
24579597 |
ttatataaagtgttcaggaaaatatacatttgttatacgcaaag-gtgaaaa-aaaatggctgaaattcttaagtttgtttatattg |
24579513 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 24633597 - 24633538
Alignment:
| Q |
2 |
tatgaactaaagggacaaacctgatgcataaatgcattttagtgacatctaataattatt |
61 |
Q |
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|||||||||||||||||||| |||| | ||||||| |||||| | |||||||||||||| |
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| T |
24633597 |
tatgaactaaagggacaaacatgatactcaaatgcactttagttatatctaataattatt |
24633538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 24667806 - 24667747
Alignment:
| Q |
2 |
tatgaactaaagggacaaacctgatgcataaatgcattttagtgacatctaataattatt |
61 |
Q |
| |
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|||||||||||||||||||| |||| |||||||| | |||||| | |||||||| ||||| |
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| T |
24667806 |
tatgaactaaagggacaaacatgatacataaatgtactttagttatatctaatagttatt |
24667747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 21205421 - 21205450
Alignment:
| Q |
198 |
atggctgaaattctcaaatttgtttatatt |
227 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21205421 |
atggctgaaattctcaaatttgtttatatt |
21205450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 71513 - 71582
Alignment:
| Q |
8 |
ctaaagggacaaacctgatgcataaatgcattttagtgacatctaataattattttagttttgatgaaga |
77 |
Q |
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|||||| ||||||| |||| |||||||| | |||||||||||||||||||||||||| |||||||||||| |
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| T |
71513 |
ctaaagagacaaacatgatacataaatgtactttagtgacatctaataattattttaattttgatgaaga |
71582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 13732151 - 13732195
Alignment:
| Q |
184 |
aaagtgaaaataaaatggctgaaattctcaaatttgtttatattg |
228 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
13732151 |
aaagttaaaaaaaaatggctgaaattctcaaatttgtttatattg |
13732195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 13719453 - 13719494
Alignment:
| Q |
184 |
aaagtgaaaataaaatggctgaaattctcaaatttgtttata |
225 |
Q |
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||||| |||| |||||||||||||||||||| |||||||||| |
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| T |
13719453 |
aaagttaaaaaaaaatggctgaaattctcaagtttgtttata |
13719494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 9754583 - 9754538
Alignment:
| Q |
182 |
aaaaagtgaaaataaaatggctgaaattctcaaatttgtttatattg |
228 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||| |||||||||||| |
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| T |
9754583 |
aaaaagtgaaaataaa-tggctgaaactctcaaaattgtttatattg |
9754538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 20503561 - 20503593
Alignment:
| Q |
195 |
aaaatggctgaaattctcaaatttgtttatatt |
227 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
20503561 |
aaaatggctaaaattctcaaatttgtttatatt |
20503593 |
T |
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