View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4291-Insertion-76 (Length: 221)

Name: NF4291-Insertion-76
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4291-Insertion-76
NF4291-Insertion-76
[»] chr4 (2 HSPs)
chr4 (1-221)||(18739563-18739783)
chr4 (59-206)||(36188962-36189109)
[»] chr7 (3 HSPs)
chr7 (55-213)||(15164872-15165030)
chr7 (16-74)||(8606504-8606562)
chr7 (22-74)||(34206343-34206395)
[»] chr1 (3 HSPs)
chr1 (59-213)||(43867789-43867944)
chr1 (14-119)||(20417202-20417307)
chr1 (14-74)||(10385980-10386040)
[»] chr5 (2 HSPs)
chr5 (14-74)||(841996-842056)
chr5 (146-206)||(33023292-33023352)
[»] chr2 (2 HSPs)
chr2 (146-206)||(17927275-17927335)
chr2 (22-74)||(79788-79840)
[»] scaffold0175 (1 HSPs)
scaffold0175 (14-75)||(19304-19365)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18739563 - 18739783
Alignment:
Q  1 aaaaatgtccctatgaaggtttctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaacttagtgtgtcgcagtattattctgtctg 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  18739563 aaaaatgtccctctgaaggtttctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaacttagtgcgtcgcagtattattccgtctg 18739662  T
Q  101 attctcaattttgtgtgtctagaggtggtaatatcgagtctgcaaatcatcttttgattcactttcctattttcggtatgttttggcaacatgtcaaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18739663 attctcaattttgtgtgtctagaggtggtaatatcgagtctgcaaatcatcttttgattcactttcctattttcggtatgttttggcaacatgtcaaaac 18739762  T
Q  201 ttggataggtgtggaatcggt 221  Q
    |||||||||||||||||||||    
T  18739763 ttggataggtgtggaatcggt 18739783  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 36189109 - 36188962
Alignment:
Q  59 ctacaaaggacaacttagtgtgtcgcagtattattctgtctgattctcaattttgtgtgtctagaggtggtaatatcgagtctgcaaatcatcttttgat 158  Q
    |||||||||||||||| ||||| ||| ||||||||| |  |||||||||||| ||||||||  || ||||  |||  || || ||| |||||||||| ||    
T  36189109 ctacaaaggacaacttggtgtgccgcggtattattccgattgattctcaattgtgtgtgtcaggatgtgggtataatgaatcggcagatcatcttttaat 36189010  T
Q  159 tcactttcctattttcggtatgttttggcaacatgtcaaaacttggat 206  Q
     || | |||||||||||||    ||||||||||||||||  |||||||    
T  36189009 ccaatgtcctattttcggttctctttggcaacatgtcaaggcttggat 36188962  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 15164872 - 15165030
Alignment:
Q  55 tggcctacaaaggacaacttagtgtgtcgcagtattattctgtctgattctcaattttgtgtgtctagaggtggtaatatcgagtctgcaaatcatcttt 154  Q
    |||||||||||||| || |||||| |||| ||||||||||  | ||||| | |||| ||||||||  || ||||||||| | | |||||| |||||| ||    
T  15164872 tggcctacaaaggataatttagtgcgtcgtagtattattccatttgattataaattgtgtgtgtcaggatgtggtaataacaaatctgcagatcatcatt 15164971  T
Q  155 tgattcactttcctattttcggtatgttttggcaacatgtcaaaacttggataggtgtg 213  Q
    | ||||| | |||||||||||||||| | ||||| ||||||||||||||||| ||||||    
T  15164972 taattcattgtcctattttcggtatgctatggcatcatgtcaaaacttggatcggtgtg 15165030  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 8606504 - 8606562
Alignment:
Q  16 aaggtttctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaactt 74  Q
    ||||| ||||| |||| |||||||||  |||||||||  ||||||||||||||||||||    
T  8606504 aaggtctctatctgtgtgtggcaactattccgcaataggtggcctacaaaggacaactt 8606562  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 34206395 - 34206343
Alignment:
Q  22 tctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaactt 74  Q
    |||||||| |||||||  |||||||||||||| ||||| |||||||| |||||    
T  34206395 tctatttgcgcgtggcgtcttctccgcaataaatggccaacaaaggataactt 34206343  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 213
Target Start/End: Complemental strand, 43867944 - 43867789
Alignment:
Q  59 ctacaaaggacaacttagtgtgtcgcagtattattctgtctgatt-ctcaattttgtgtgtctagaggtggtaatatcgagtctgcaaatcatcttttga 157  Q
    |||||||||| || |||||| ||||  |||||||||||||||||| |||||||||||||||   || || |||||| ||| || ||||||||| |||| |    
T  43867944 ctacaaaggataatttagtgcgtcgtggtattattctgtctgatttctcaattttgtgtgttaggatgtcgtaataacgaatccgcaaatcatattttaa 43867845  T
Q  158 ttcactttcctattttcggtatgttttggcaacatgtcaaaacttggataggtgtg 213  Q
    |||| |  |||||||| ||| |||| || |||| |||||||||||| || ||||||    
T  43867844 ttcattgccctatttttggtgtgttgtgacaacttgtcaaaacttgaatcggtgtg 43867789  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 20417202 - 20417307
Alignment:
Q  14 tgaaggtttctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaacttagtgtgtcgcagtattattctgtctgattctcaattttg 113  Q
    |||||||||| |||||||||||||  ||||||||||| |  |||||||||||||| || ||  |||||  ||  ||||||| || |||||||||||| ||    
T  20417202 tgaaggtttcaatttgtgcgtggcgtcttctccgcaacaggtggcctacaaaggataatttcttgtgttacaacattattccgtttgattctcaattgtg 20417301  T
Q  114 tgtgtc 119  Q
     |||||    
T  20417302 cgtgtc 20417307  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 10385980 - 10386040
Alignment:
Q  14 tgaaggtttctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaactt 74  Q
    |||| ||||||||||| |||||||  |||||||||||||  ||||| |||||||| |||||    
T  10385980 tgaaagtttctatttgcgcgtggcgtcttctccgcaatagatggccaacaaaggataactt 10386040  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 842056 - 841996
Alignment:
Q  14 tgaaggtttctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaactt 74  Q
    |||| |||||||||||||||||||| |||||||||||||  ||||| |||||||| |||||    
T  842056 tgaaagtttctatttgtgcgtggcatcttctccgcaatagatggccaacaaaggataactt 841996  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 33023292 - 33023352
Alignment:
Q  146 atcatcttttgattcactttcctattttcggtatgttttggcaacatgtcaaaacttggat 206  Q
    |||||||||| ||||| | ||| |||||||||||| |||||||||||||||||| ||||||    
T  33023292 atcatcttttaattcattgtcccattttcggtatgctttggcaacatgtcaaaaattggat 33023352  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 17927335 - 17927275
Alignment:
Q  146 atcatcttttgattcactttcctattttcggtatgttttggcaacatgtcaaaacttggat 206  Q
    ||||||| || ||||| | ||||||||||||| || ||||||| |||||||||||||||||    
T  17927335 atcatctcttaattcattgtcctattttcggtgtgctttggcatcatgtcaaaacttggat 17927275  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 79840 - 79788
Alignment:
Q  22 tctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaactt 74  Q
    |||||||| |||||||  |||||||| ||||| |||||||||||||| |||||    
T  79840 tctatttgcgcgtggcgtcttctccgtaataaatggcctacaaaggataactt 79788  T

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Target: scaffold0175 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 19304 - 19365
Alignment:
Q  14 tgaaggtttctatttgtgcgtggcaacttctccgcaataattggcctacaaaggacaactta 75  Q
    ||||||||||||| ||||||||||  ||  |||||||||| ||| | |||||||||||||||    
T  19304 tgaaggtttctatctgtgcgtggcgtctattccgcaataagtggacaacaaaggacaactta 19365  T

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