View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4291-Insertion-77 (Length: 53)

Name: NF4291-Insertion-77
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4291-Insertion-77
NF4291-Insertion-77
[»] chr5 (1 HSPs)
chr5 (5-53)||(12423122-12423170)
[»] chr3 (1 HSPs)
chr3 (5-53)||(30626649-30626697)
[»] chr4 (1 HSPs)
chr4 (5-53)||(8719537-8719585)
[»] chr1 (2 HSPs)
chr1 (5-53)||(38459587-38459635)
chr1 (5-53)||(38460521-38460569)


Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 12423170 - 12423122
Alignment:
Q  5 actaccatggtaacccttatcgacgatggtggtgccagaaacatcaaca 53  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  12423170 actaccatggaaacccttgtcgacgatggtggtgccagaaacatcaaca 12423122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 30626649 - 30626697
Alignment:
Q  5 actaccatggtaacccttatcgacgatggtggtgccagaaacatcaaca 53  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  30626649 actaccatggaaacccttgtcgacgatggtggtgccagaaacatcaaca 30626697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 8719585 - 8719537
Alignment:
Q  5 actaccatggtaacccttatcgacgatggtggtgccagaaacatcaaca 53  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  8719585 actaccatgaaaacccttgtcgacgatggtggtgccagaaacatcaaca 8719537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 38459587 - 38459635
Alignment:
Q  5 actaccatggtaacccttatcgacgatggtggtgccagaaacatcaaca 53  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  38459587 actaccatggaaacccttgtcgacgatggtggtgccagaaacttcaaca 38459635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38460569 - 38460521
Alignment:
Q  5 actaccatggtaacccttatcgacgatggtggtgccagaaacatcaaca 53  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  38460569 actaccatggaaacccttgtcgacgatggtggtgccagaaacttcaaca 38460521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University