View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291-Insertion-84 (Length: 234)
Name: NF4291-Insertion-84
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291-Insertion-84 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 1491952 - 1491733
Alignment:
| Q |
15 |
tagaacactagatatacttttaattagaattgtcggtgctacatattattcattactcttcaatatatactttccacttctttaatctttttaaaaccat |
114 |
Q |
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| T |
1491952 |
tagaacactagatatacttttaattagaattgttggtgctacatattattcattactcttcaatacatactttccacttctttaatcttttttaaaccat |
1491853 |
T |
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| Q |
115 |
ttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggtttgaggta |
214 |
Q |
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| T |
1491852 |
ttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggtttgaggta |
1491753 |
T |
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| Q |
215 |
aaaggttgaagaccatgaag |
234 |
Q |
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| T |
1491752 |
aaaggttgaagaccatgaag |
1491733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 1490330 - 1490519
Alignment:
| Q |
46 |
gtcggtgctacatattattcattactcttcaatatatactttccact-tctttaatctttttaaaaccatttaaatggattaacttgcaacttcagcatg |
144 |
Q |
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| T |
1490330 |
gtcgttgctacatattattcattactcttcaatatataatttccacaatgtttaatcttttttaaaccattcaaatggcttaccttgcaactacaacgtg |
1490429 |
T |
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| Q |
145 |
tttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggtttgaggtaaaaggttgaagaccatgaag |
234 |
Q |
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| T |
1490430 |
tttcttgtcttgctctacaatctctgaaagctccctttagctactattttcattcaaaaggttcgaggtaaaaggctgaacaccatgaag |
1490519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 1464514 - 1464347
Alignment:
| Q |
62 |
attcattactcttcaatatatactttccacttctttaatctttttaaaaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctg |
161 |
Q |
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| T |
1464514 |
attcattactcttcaaca-ataatttccacttctgaaatctttttcaa-ccattcaattggcttaccttgccatttcagcacgtttcttggcttgctctg |
1464417 |
T |
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| Q |
162 |
caatctctgaaagctccctatagctactattttcattgaaaaggtttgaggtaaaaggttgaagaccatg |
231 |
Q |
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| T |
1464416 |
caatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaagaccatg |
1464347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 1495270 - 1495354
Alignment:
| Q |
128 |
cttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggtttgagg |
212 |
Q |
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| T |
1495270 |
cttgcaacttcagcacgtctcttggcttgctccgcaatctccgaaagttctctatagctattcttttcattgaaaacgttggagg |
1495354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 26792181 - 26792057
Alignment:
| Q |
109 |
aaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggttt |
208 |
Q |
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| T |
26792181 |
aaccattcaagtggcttaccttgcaatttcggcacgtttcctggctagatctgcaatttctgaaagctccttatagctactattttcattgaaagtgtag |
26792082 |
T |
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| Q |
209 |
gaggtaaaaggttgaagaccatgaa |
233 |
Q |
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| T |
26792081 |
gagctagaaggctgaagaccatgaa |
26792057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 50278174 - 50278097
Alignment:
| Q |
130 |
tgcaacttcagcatgtttcttgtcttgctctgcaatctctgaaagctccctatagctactattttcattgaaaaggtt |
207 |
Q |
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| T |
50278174 |
tgcaacttcagcgcgtctcttggcttgctcagcaatctcagaaagctccctgtagctattcttgtcattgaaaaggtt |
50278097 |
T |
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