View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291_high_2 (Length: 499)
Name: NF4291_high_2
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 6002057 - 6002131
Alignment:
| Q |
14 |
ttctatctcaaaatgttctcagaaaattttcattgatgtttaaatttttccatcaagggtatatacacttaatat |
88 |
Q |
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| T |
6002057 |
ttctatctcaaaatgttctcagaaaattttcattgatgtttaaatttttccatcaagggtatatacacttaatat |
6002131 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 6011902 - 6011971
Alignment:
| Q |
311 |
ccaggagagctttgtatcacttttaaatcatcaaaaattaaatacaaattttcctttttaacaaaaacac |
380 |
Q |
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| T |
6011902 |
ccaggagagttttgcaacactttcaaatcatcaaaaatcaaatacaaacttcccttcttaacaaaaacac |
6011971 |
T |
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