View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4291_high_3 (Length: 491)
Name: NF4291_high_3
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_high_3 |
 | |
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| [»] scaffold0187 (7 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 37866017 - 37866515
Alignment:
| Q |
1 |
tcattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctataac |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37866017 |
tcattttcacaacatagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctataac |
37866116 |
T |
|
| Q |
101 |
cagcaatttttggagatttgtcttgtcttcattttcttaggattcagatcccnnnnnnnnnnnnnnnnnnnnnntcagtgttattttttgttacataaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
37866117 |
cagcaatttttggagatttgtcttgtcttcattttcttaggattcagatcccaaaaagaaagaaaaaaattaaatcagtgttattttttgttacataaat |
37866216 |
T |
|
| Q |
201 |
ctgtgagtactcaatactactcaacactgatgccatactcttgtattacaaatcttgaaatggaataacaaccatctatatttgtgtaagattctacttt |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37866217 |
ccgtgagtactcaatactactcaacactgatgccatactcttgtattacaaatcttgaaatggaataacaaccatctatatttgtttaagattctacttt |
37866316 |
T |
|
| Q |
301 |
tcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagctttcagtctttagtctcaagaatcacctttttcaaaa----- |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37866317 |
tcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagctttcagtctttagtctcaagaatcacctttttcaaaagtact |
37866416 |
T |
|
| Q |
396 |
-----------------gtcctttgtcagatcttaatacagagaatttaagatgtatcagatcttcaaagtattattattaattacaggatgataaaat |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||| |||| |
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|
| T |
37866417 |
cttactattgctctcttgtcctttgtcagatcttaatacagagaatttattatgtatcggatcttcaaagtattataattaattacaagatgattaaat |
37866515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 260 - 477
Target Start/End: Original strand, 37909411 - 37909650
Alignment:
| Q |
260 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
359 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37909411 |
atggaattgcaaccatctatatttgtataagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
37909510 |
T |
|
| Q |
360 |
ttcagtctttagtctcaagaatcacctttttcaaaa----------------------gtcctttgtcagatcttaatacagagaatttaagatgtatca |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||| |
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|
| T |
37909511 |
ttcagtctttagtctcaagaatcacctttttcaaaagtactcttactattgctttcttgtcctttgtaagatcttaatacagagaatttaatatttatca |
37909610 |
T |
|
| Q |
438 |
gatcttcaaagtattattattaattacaggatgataaaat |
477 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||| |
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|
| T |
37909611 |
aatcttcaaagtattataattaattacaagatgattaaat |
37909650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 37909201 - 37909330
Alignment:
| Q |
2 |
cattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctata--a |
99 |
Q |
| |
|
||||||||||||| | |||||| || || ||||||| || ||||||||| ||||||||||||||||||||||||||||||||| || | ||||| | |
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|
| T |
37909201 |
cattttcacaacataacacgttacatatatcctccaaagtgaacaaagacaggtaaacatcatagaatttcaaaacataaggtatccacgtactatatga |
37909300 |
T |
|
| Q |
100 |
ccagcaatttttggagatttgtcttgtctt |
129 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |
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|
| T |
37909301 |
ccagcaatttttggagttttgttttgtctt |
37909330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 37916584 - 37916711
Alignment:
| Q |
260 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
359 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| | ||||| |||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
37916584 |
atggaattacaaccatctatatttgtgaaagattctactttttc------------aaagaattcctttt-gatggtttcataaccgattatttttagct |
37916670 |
T |
|
| Q |
360 |
ttcagtctttagtctcaagaatcacctttttcaaaagtcct |
400 |
Q |
| |
|
||||||||| | |||| |||||| |||||| ||||||||| |
|
|
| T |
37916671 |
ttcagtcttcaaactcacgaatcaactttttgaaaagtcct |
37916711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 260 - 477
Target Start/End: Complemental strand, 29666 - 29427
Alignment:
| Q |
260 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
359 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29666 |
atggaattgcaaccatctatatttgtataagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
29567 |
T |
|
| Q |
360 |
ttcagtctttagtctcaagaatcacctttttcaaaa----------------------gtcctttgtcagatcttaatacagagaatttaagatgtatca |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
29566 |
ttcagtctttagtctcaagaatcacctttttcaaaagtactcttactattgctttcttgtcctttgtaagatcttaatacagagaatttaatatttatca |
29467 |
T |
|
| Q |
438 |
gatcttcaaagtattattattaattacaggatgataaaat |
477 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
29466 |
aatcttcaaagtattataattaattacaagatgattaaat |
29427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 260 - 477
Target Start/End: Complemental strand, 8425 - 8187
Alignment:
| Q |
260 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
359 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8425 |
atggaattgcaaccatctatatttgtataagattctactttttctgaaggaatcataaataattc-tttttgatggtttcataaccgattgtttttagct |
8327 |
T |
|
| Q |
360 |
ttcagtctttagtctcaagaatcacctttttcaaaa----------------------gtcctttgtcagatcttaatacagagaatttaagatgtatca |
437 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
8326 |
ttcagtctttagtctcaagaaccacctttttcaaaagtactcttactattgctttcttgtcctttgtaagatcttaatacagagaatttaatatttatca |
8227 |
T |
|
| Q |
438 |
gatcttcaaagtattattattaattacaggatgataaaat |
477 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
8226 |
aatcttcaaagtattataattaattacaagatgattaaat |
8187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 260 - 477
Target Start/End: Complemental strand, 18753 - 18515
Alignment:
| Q |
260 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
359 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18753 |
atggaattgcaaccatctatatttgtataagattctactttttctgaaggaatcataaataattcctttt-gatggtttcataaccgattgtttttagct |
18655 |
T |
|
| Q |
360 |
ttcagtctttagtctcaagaatcacctttttcaaaa----------------------gtcctttgtcagatcttaatacagagaatttaagatgtatca |
437 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
18654 |
ttcagtctttagtctcaagaaccacctttttcaaaagtactcttactattgctttcttgtcctttgtaagatcttaatacagagaatttaatatttatca |
18555 |
T |
|
| Q |
438 |
gatcttcaaagtattattattaattacaggatgataaaat |
477 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
18554 |
aatcttcaaagtattataattaattacaagatgattaaat |
18515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 232 - 355
Target Start/End: Complemental strand, 1257 - 1135
Alignment:
| Q |
232 |
gccatactcttgtattacaaatcttgaaatggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttg |
331 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||| ||||| |
|
|
| T |
1257 |
gccatactcttgtattacagattttgaaatggaataacaaccatctatatttgtgtaagattctactttttctcaagtaattttgaagagttcc-ttttg |
1159 |
T |
|
| Q |
332 |
atggtttcataaccgattgttttt |
355 |
Q |
| |
|
|||| |||| |||||||| ||||| |
|
|
| T |
1158 |
atgggttcacaaccgattattttt |
1135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 8638 - 8510
Alignment:
| Q |
2 |
cattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctataacc |
101 |
Q |
| |
|
||||||||||||| | |||||| ||||| ||||||| || ||||||||| | ||||||||||||||| ||||||||||||||||| || | |||||||| |
|
|
| T |
8638 |
cattttcacaacataacacgttacatgtatcctccaaagtgaacaaagacaagtaaacatcatagaatctcaaaacataaggtatccacgtactataacc |
8539 |
T |
|
| Q |
102 |
agcaatttttggagatttgtcttgtcttc |
130 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |
|
|
| T |
8538 |
agtaatttttggagttttgtcttgtcttc |
8510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 18966 - 18838
Alignment:
| Q |
2 |
cattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctataacc |
101 |
Q |
| |
|
||||||||||||| | |||||| ||||| ||||||| || ||||||||| | ||||||||||||||| ||||||||||||||||| || | |||||||| |
|
|
| T |
18966 |
cattttcacaacataacacgttacatgtatcctccaaagtgaacaaagacaagtaaacatcatagaatctcaaaacataaggtatccacgtactataacc |
18867 |
T |
|
| Q |
102 |
agcaatttttggagatttgtcttgtcttc |
130 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |
|
|
| T |
18866 |
agtaatttttggagttttgtcttgtcttc |
18838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 29876 - 29747
Alignment:
| Q |
2 |
cattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctata--a |
99 |
Q |
| |
|
||||||||||||| | |||||| || || ||||||| || ||||||||| ||||||||||||||||||||||||||||||||| || | ||||| | |
|
|
| T |
29876 |
cattttcacaacataacacgttacatatatcctccaaagtgaacaaagacaggtaaacatcatagaatttcaaaacataaggtatccacgtactatatga |
29777 |
T |
|
| Q |
100 |
ccagcaatttttggagatttgtcttgtctt |
129 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |
|
|
| T |
29776 |
ccagcaatttttggagttttgttttgtctt |
29747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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