View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4291_low_1 (Length: 536)
Name: NF4291_low_1
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 38152585 - 38153102
Alignment:
| Q |
1 |
ttgatggataaggaaaatggattggttctgtaaaaataaaaatgggtactttctgcaattctactatttgatttttgacattgtcacagattgttgtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38152585 |
ttgatggataaggaaaatggattggttctgtaaaaagaaaaatgggtactttctgcaattctactatttgatttttgacattgtcacagattgttgtttg |
38152684 |
T |
|
| Q |
101 |
atgacctcggcagttgaaggattgttctcaaaaatgacttcatttccatctccatagctatccattccttgagacatgagttgccagaaaattccacctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38152685 |
atgacctcggcagttgaaggattgttctcaaaaatgacttcatttccatctccatagctatccattccttgagacatgagttgccagaaaattccacctg |
38152784 |
T |
|
| Q |
201 |
tacatgagcctccactcatagcacttgtagctatggcattgtatactttcttgaagtaattatcccttatagctacggtaaatccaggtgactttgaaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38152785 |
cacatgagcctccactcatagcacttgtagctatggcattgtatactttcttgaagtaattatcccttatagctacggtaaatccaggtgactttgaaga |
38152884 |
T |
|
| Q |
301 |
ctttccaaactcttgtacaataatgggcttccctaaaatagtgtttgagtccttaaaatgagcttctatccatttgtcaacaaatgcacttttggctctc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38152885 |
ctttccaaactcttgtacaataatgggcttccctaaaatagtgtttgagtccttaaaatgagcttctatccatttgtcaacaaatgcacttttggctctc |
38152984 |
T |
|
| Q |
401 |
tcgtttgagccttgtaacctgcattattcatatataatccatattggtattctttttatgtgaaaaaattaggttgataagattgtgcatcatccaagac |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38152985 |
tcgtttgagccttgtaacctgcatcattcatatataatccatattggtattctttttatgtgaaaaaattaggttgataagattgtgcaatatccaagac |
38153084 |
T |
|
| Q |
501 |
aagatgatattatgtttg |
518 |
Q |
| |
|
||| ||||||| |||||| |
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| T |
38153085 |
aagttgatattgtgtttg |
38153102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 47 - 518
Target Start/End: Original strand, 38140737 - 38141214
Alignment:
| Q |
47 |
tactttctgcaattctactatttgatttttgacattgtcacagattgttgtttgatgacctcggcagttgaaggattgttctcaaaaatgacttcatttc |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
38140737 |
tactttctgcaattctactatttgatttttgacattgtcacagattgttgtttgatgacctcggcagttgaaggattgttctcaaaaatgacttcatagc |
38140836 |
T |
|
| Q |
147 |
catctccatagctatccattccttgagacatgagttgccagaaaattccacctgtacatgagcctccactcatagcacttgtagctatggcattgtatac |
246 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
38140837 |
catctccataggtatccattccttgagacagaagtagccagaaaattccacctgcacatgagcctccactcatagcacttttagatatggcattgtatac |
38140936 |
T |
|
| Q |
247 |
tttcttgaagtaattatcccttatagctacggtaaatccaggtgactttgaagactttccaaactcttgtacaataatgggcttccctaaaatagtgttt |
346 |
Q |
| |
|
|||||| |||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |
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|
| T |
38140937 |
tttcttaaagtaactatcccttatagctatgctaaatccaggtgtctttgaagactttccaaactcttgtacaataatgggttttcctaaaatagtattt |
38141036 |
T |
|
| Q |
347 |
gagtccttaaaatgagcttctatccatttgtcaacaaatgcacttttggctctctcgtttgagccttgtaacctgcatt-attcatatataatccatatt |
445 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| ||| |
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|
| T |
38141037 |
gagtcatgaaaatgagcttctatccatttgtcaacaaatgcacttttggctgtctcgtttgagccttgtaacctacattcattcatatataatccagatt |
38141136 |
T |
|
| Q |
446 |
ggta---ttctttttatgtg-aaaaaattaggttgataagattgtgcatca-tccaagacaagatgatattatgtttg |
518 |
Q |
| |
|
|||| || |||||||||| ||||||||||||||||||||| ||||||| ||||| || || |||||||||||||| |
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|
| T |
38141137 |
ggtatttttttttttatgtgaaaaaaattaggttgataagatgatgcatcagtccaaaacgagttgatattatgtttg |
38141214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 50 - 432
Target Start/End: Original strand, 38108284 - 38108666
Alignment:
| Q |
50 |
tttctgcaattctactatttgatttttgacattgtcacagattgttgtttgatgacctcggcagttgaaggattgttctcaaaaatgacttcatttccat |
149 |
Q |
| |
|
|||||| || ||||||||||||| | |||||| ||| ||||||||||||||||| ||| ||||||||||| |||||||||| |||||||| ||||| |
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|
| T |
38108284 |
tttctgaaaatctactatttgatatgtgacatcttcatagattgttgtttgatgatctcaccagttgaaggacaattctcaaaaacgacttcatatccat |
38108383 |
T |
|
| Q |
150 |
ctccatagctatccattccttgagacatgagttgccagaaaattccacctgtacatgagcctccactcatagcacttgtagctatggcattgtatacttt |
249 |
Q |
| |
|
|||||||| ||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||| | ||||||||| ||| |||||||||||||||||| |
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|
| T |
38108384 |
ctccataggtatccatcccttgagataggagttgccagaaaattccacctgcacatgagcctccattgatagcacttctagatatggcattgtatacttt |
38108483 |
T |
|
| Q |
250 |
cttgaagtaattatcccttatagctacggtaaatccaggtgactttgaagactttccaaactcttgtacaataatgggcttccctaaaatagtgtttgag |
349 |
Q |
| |
|
||| |||||||||||||||||||||| | || ||||| |||| ||||||||||||||||||||| || || | |||||| ||||||||| |||||| |
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|
| T |
38108484 |
cttaaagtaattatcccttatagctatgctatatccatgtgattttgaagactttccaaactctgctataaccaagggcttttttaaaatagtatttgag |
38108583 |
T |
|
| Q |
350 |
tccttaaaatgagcttctatccatttgtcaacaaatgcacttttggctctctcgtttgagccttgtaacctgcattattcata |
432 |
Q |
| |
|
|| | || ||||||||||||||||| |||||||| |||||| ||| | || |||||||| ||||||||| || ||||||| |
|
|
| T |
38108584 |
tcttgaatatgagcttctatccattcatcaacaaagtgacttttagctgtttcatttgagccctgtaacctgtatcattcata |
38108666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 50 - 424
Target Start/End: Original strand, 38084120 - 38084494
Alignment:
| Q |
50 |
tttctgcaattctactatttgatttttgacattgtcacagattgttgtttgatgacctcggcagttgaaggattgttctcaaaaatgacttcatttccat |
149 |
Q |
| |
|
||||| ||||||| || | |||| |||||||| | | |||||||||||||||||| | || ||||||| || | ||||||||||||||||||| |||| |
|
|
| T |
38084120 |
tttcttcaattctgctttctgatacttgacatttttaaagattgttgtttgatgacttgggaagttgaaagactattctcaaaaatgacttcatagccat |
38084219 |
T |
|
| Q |
150 |
ctccatagctatccattccttgagacatgagttgccagaaaattccacctgtacatgagcctccactcatagcacttgtagctatggcattgtatacttt |
249 |
Q |
| |
|
|||| | ||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
38084220 |
ctcccatgttatccatcccttgagacaggagttgccaaaaaattccacctgcacatgagcctccactgatagcacttgtagatatggcattgtatacttt |
38084319 |
T |
|
| Q |
250 |
cttgaagtaattatcccttatagctacggtaaatccaggtgactttgaagactttccaaactcttgtacaataatgggcttccctaaaatagtgtttgag |
349 |
Q |
| |
|
||| |||||| | |||||| || ||| | || |||||| ||||||||||||||||||||||||| || ||| || ||||| ||||||| ||| ||||| |
|
|
| T |
38084320 |
cttaaagtaactgtcccttttatctatgctatatccagctgactttgaagactttccaaactctgctataattattggctttcctaaaacagtatttgaa |
38084419 |
T |
|
| Q |
350 |
tccttaaaatgagcttctatccatttgtcaacaaatgcacttttggctctctcgtttgagccttgtaacctgcat |
424 |
Q |
| |
|
|||| || || ||| |||||||||| ||||||||| || ||| || |||| | ||||||||||| ||||||| |
|
|
| T |
38084420 |
tcctgaatgtgtgctcctatccatttatcaacaaatacattttgggtagtctcttctgagccttgtatcctgcat |
38084494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 63 - 396
Target Start/End: Original strand, 38089165 - 38089498
Alignment:
| Q |
63 |
actatttgatttttgacattgtcacagattgttgtttgatgacctcggcagttgaaggattgttctcaaaaatgacttcatttccatctccatagctatc |
162 |
Q |
| |
|
|||| ||||| |||||||| ||| |||||||||| ||||||| || || ||||||||||| |||| || || ||||||| ||||||||||||| ||| |
|
|
| T |
38089165 |
actacttgatatttgacatcttcagagattgttgtctgatgacttctgcggttgaaggattattcttaagaacaacttcataaccatctccatagccatc |
38089264 |
T |
|
| Q |
163 |
cattccttgagacatgagttgccagaaaattccacctgtacatgagcctccactcatagcacttgtagctatggcattgtatactttcttgaagtaatta |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||| | || | ||| || |||||| | |
|
|
| T |
38089265 |
cattccttgagacatgagttgccagaaaattccacccgcgcatgagcctccactgatagcacttgtagatatggcactataaattttgttaaagtaactg |
38089364 |
T |
|
| Q |
263 |
tcccttatagctacggtaaatccaggtgactttgaagactttccaaactcttgtacaataatgggcttccctaaaatagtgtttgagtccttaaaatgag |
362 |
Q |
| |
|
|||||| | || | | |||||||| || ||||| || ||||||||||||||||||| || ||||| |||||||||| |||| || | || ||| | |
|
|
| T |
38089365 |
tccctttgatctgtgcgatatccaggtaaccttgaaaacgttccaaactcttgtacaatgattggctttactaaaatagtatttgcatcttgaatatgtg |
38089464 |
T |
|
| Q |
363 |
cttctatccatttgtcaacaaatgcacttttggc |
396 |
Q |
| |
|
|| |||||||||| |||| |||| ||| |||||| |
|
|
| T |
38089465 |
ctcctatccatttatcaaaaaatacacctttggc |
38089498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 37070657 - 37070490
Alignment:
| Q |
68 |
ttgatttttgacattgtcacagattgttgtttgatgacctcggcagttgaaggattgttctcaaaaatgacttcatttccatctccatagctatccattc |
167 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||| || | ||||||||| ||||||| || ||||||| ||||||||||||| |||||||| |
|
|
| T |
37070657 |
ttgatatttgacatattcagagattgttgtttgatgacttctgtcactgaaggattattctcaagaacaacttcataaccatctccatagccatccattc |
37070558 |
T |
|
| Q |
168 |
cttgagacatgagttgccagaaaattccacctgtacatgagcctccactcatagcacttgtagctatg |
235 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||| ||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
37070557 |
cttgagacataagttgctagaaaatctcacctgcacatgagcctccactaatatcacttgtagatatg |
37070490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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