View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291_low_10 (Length: 307)
Name: NF4291_low_10
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 2794295 - 2794182
Alignment:
| Q |
114 |
ccctattactattacatttccttcatcaccaatgtaaatcaaaactcaacataggcaagagacttcatattacgctgcgttgaatatcatacattgaaaa |
213 |
Q |
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| T |
2794295 |
ccctattactattacatttcctccatcaccaatgtatatcaaaactgaacataggcaagaaacttcatat----ctgtgttgagtatcatacgttgaaaa |
2794200 |
T |
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| Q |
214 |
atagtgttttatggacat |
231 |
Q |
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| T |
2794199 |
atagtgttttttggacat |
2794182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 2794153 - 2794092
Alignment:
| Q |
230 |
attgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgat |
291 |
Q |
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| T |
2794153 |
attgaatgtggaaggtgaattgcagaacttaccttttgggtcaagtcaagtgctccattgat |
2794092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 26048541 - 26048496
Alignment:
| Q |
54 |
tccttaacaagtgcccctgggcactcgttagcattttccatatttt |
99 |
Q |
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| T |
26048541 |
tccttaacgagtgccccggggcactcgttaacattttccatatttt |
26048496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 291
Target Start/End: Complemental strand, 16389944 - 16389790
Alignment:
| Q |
137 |
catcaccaatgtaaatcaaaactcaacataggcaagagacttcatattacgctgcgttgaatatcatacattgaaaaatagtgttttatggacattgaat |
236 |
Q |
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| T |
16389944 |
catcaacaatgtatatcaaaactcgacacaggtaagaaacttcatattcttctgcattgaatatcatacattgaaaatttgtatcgtattgacattagtt |
16389845 |
T |
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| Q |
237 |
gtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgat |
291 |
Q |
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| T |
16389844 |
gtgaaaggtgaattgcagcacttaccttttcggtcaaatcaagtgctccactgat |
16389790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 48669108 - 48669046
Alignment:
| Q |
229 |
cattgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgat |
291 |
Q |
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||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||| |||| |
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| T |
48669108 |
cattgaatgtggaaggtgacctgcagcacttaccttttcggtcaaatcaagtgctccactgat |
48669046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 5091806 - 5091753
Alignment:
| Q |
40 |
tttccatttataattccttaacaagtgcccc-tgggcactcgttagcattttcc |
92 |
Q |
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| T |
5091806 |
tttccttttataattccttaacaagtgccccgggggcacttgttaacattttcc |
5091753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 49980350 - 49980286
Alignment:
| Q |
26 |
tttccaatgtaatgtttccatttataattccttaacaagtgc-ccctgggcactcgttagcattt |
89 |
Q |
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| T |
49980350 |
tttccaagataatatttcctttcataattccttaacaagtgctccatgggcacttgttagcattt |
49980286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 8208088 - 8208144
Alignment:
| Q |
46 |
tttataattccttaacaagtgcccctgggcactcgttagcattttccatattttaat |
102 |
Q |
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|||||||| ||||||| ||||||| | |||||| |||||||||| ||||||||||| |
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| T |
8208088 |
tttataataccttaaccagtgcccgtaggcactagttagcatttctcatattttaat |
8208144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 28601006 - 28600966
Alignment:
| Q |
54 |
tccttaacaagtgcccctgggcactcgttagcattttccat |
94 |
Q |
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| T |
28601006 |
tccttaaccagtgcccccgggcactggttagcattttccat |
28600966 |
T |
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