View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291_low_11 (Length: 299)
Name: NF4291_low_11
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 7724288 - 7724016
Alignment:
| Q |
18 |
ctttcaatctcacatagagctcactttccggctttccatttttaactaaaaaattgnnnnnnnaacaaatcagaatggaatatattatcaacaagaaaac |
117 |
Q |
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| T |
7724288 |
ctttcaatctcacatagagctcactttccggctttcaatttttaactaaaaaattgtttttttaacgaatcagaatggaatatattatcaacaagaaaac |
7724189 |
T |
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| Q |
118 |
attctatgaagcacaactgcataagatgtattagagaagaacatatgagtttataaaaggaacaagcgaaaaatgataagagagtaaaataatagagagc |
217 |
Q |
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| T |
7724188 |
attctatgaagcacaactgcacaagaagtattagagaagaacatatgggtttataaaaggaacaagtaaaaaatgataagagagtaaaataacagagagc |
7724089 |
T |
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| Q |
218 |
aattaaacaatggtcaaacaagggaaaggggcaagccatcggctatgatatccaaaaacaatattagtataat |
290 |
Q |
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| T |
7724088 |
aattaaacaatgctcaaacaagggaaagggacaagccatcggctatgatatccaagaacaatattagcataat |
7724016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 7716510 - 7716253
Alignment:
| Q |
18 |
ctttcaatctcacatagagctcactttccggctttccatttttaactaaaaaatt-gnnnnnnnaacaaatcagaatggaatatattatcaacaagaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||||| |||||| |||| |
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| T |
7716510 |
ctttcaatctcacatagagctcactttccggctttcagtttttaactaaaaaaaaagtttttttaaagaatca-aatggaatatattaccaacaaaaaaa |
7716412 |
T |
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| Q |
117 |
cattctatgaagcacaactgcataagatgtattagagaagaacatatgagtttataaaaggaacaagcgaaaaatgataagagagtaaaataatagagag |
216 |
Q |
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| T |
7716411 |
cattctatgcagcacaa--------gatgtatta-agaagaacatcagagattataaaagaaacaagtaaatattgatatgagagaaaaataatagagag |
7716321 |
T |
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| Q |
217 |
caattaaacaatggtcaaacaagggaaaggggcaagccatcggctatgatatccaaaaacaatattag |
284 |
Q |
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| T |
7716320 |
caattaaacaatgtcgaaacaagagaaaggggcaagccactagctatgatacccaaaaacaatattag |
7716253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 7730430 - 7730173
Alignment:
| Q |
18 |
ctttcaatctcacatagagctcactttccggctttccatttttaactaaaaaattgnnnnnnn-aacaaatcagaatggaatatat-tat---caacaag |
112 |
Q |
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||||||| |||| |||||||||||||||||||||| |||||||||||||||| || || ||| |||||||||||||| ||| ||||||| |
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| T |
7730430 |
ctttcaaactcatgtagagctcactttccggctttcaatttttaactaaaaaaatgttttttttaatgaataagaatggaatatatatatttccaacaag |
7730331 |
T |
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| Q |
113 |
aaaacattctatgaagcacaactgcataagatgtattagagaagaacatatgagtttataaaaggaacaagcgaaaaatgataagagagtaaaataatag |
212 |
Q |
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| T |
7730330 |
aaaacattttatgtagcacaa--------gatgtactagagaagatca---gagtttattaaaggaacaaataaaaaatgataagaga--agaataaaag |
7730244 |
T |
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| Q |
213 |
agagcaattaaacaatggtcaaacaagggaaaggggcaagccatcggctatgatatccaaaaacaatatta |
283 |
Q |
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| T |
7730243 |
agagcaattaaacaatgctcaaacaagggaaagggacaagccatcggctatgatatccaaaaacaatatta |
7730173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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