View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291_low_16 (Length: 238)
Name: NF4291_low_16
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 27628506 - 27628286
Alignment:
| Q |
17 |
actatgatatataatgatgttgaattttgcgatacaattcagattgtttatctaaatattatgatctaagactagctttgaacaacctactatgatatat |
116 |
Q |
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| T |
27628506 |
actatgatatataatgatgttgaattttgcgatacaattcagatggtttatctaaatattatgatccaagactagctttgaacaacctactatgatatat |
27628407 |
T |
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| Q |
117 |
aattactaaattgacaatttaaaagattgtgtaaagaaggtttacgcattaatatttatagttgttgtttttctgaatatgaaaactttcattccaaact |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27628406 |
aattactaaattgacaatttaaaggattgtgtaaagaaggtttacgcattaatatttatcgttgttgtttttctgaatatgaaaactttcattccaaact |
27628307 |
T |
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| Q |
217 |
ttgtgtagttgtgtgacaatc |
237 |
Q |
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||||||||| ||||||||||| |
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| T |
27628306 |
ttgtgtagtggtgtgacaatc |
27628286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 34514295 - 34514074
Alignment:
| Q |
17 |
actatgatatataatgatgttgaattttgcgatacaattcagattgtttatctaaatattatgatctaagactagctttgaacaacctactatgatatat |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34514295 |
actatgatatataatgatgttaaattttgcgatacaattcagatggtttatctaaatattatgatctaagactagctttgaacaccctactatgatatat |
34514196 |
T |
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| Q |
117 |
aattactaaattgacaatttaaaagattgtgtaaagaaggtttacgcattaatatttatagttgttgtttttctgaatatgaaaactttcattccaaact |
216 |
Q |
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| T |
34514195 |
aattactaaattgacaatttaaaggattgtgtaaagaaggtttacgcattaatatttatcgttgttgcttttctgaatatgaaaactttcattccaaact |
34514096 |
T |
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| Q |
217 |
ttgtgtagttgtgtgacaatcc |
238 |
Q |
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| T |
34514095 |
ttgtgtagttgtgtgacaatcc |
34514074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 34486458 - 34486260
Alignment:
| Q |
34 |
tgttgaattttgcgatacaattcagattgtttatctaaatattatgatctaagactagctttgaac-aacctactatgatatataattactaaattgaca |
132 |
Q |
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|||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |
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| T |
34486458 |
tgttgaattttgtgatacaattcagatggtttatctaaatctcatgatctaagactagctttgaactaacctactatgatacataattactaaattgaaa |
34486359 |
T |
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| Q |
133 |
atttaaaagattgtgtaaagaaggtttacgcattaatatttatagttgttgtttttctgaatatgaaaactttcattccaaactttgtgtagttgtgtga |
232 |
Q |
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| T |
34486358 |
attcaaaggattatatacaagaggtttacgcatta--atttatcattattctttttctgaatatgaaaa-tttcattccaaactttgtatagttgtgtga |
34486262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 27615752 - 27615557
Alignment:
| Q |
34 |
tgttgaattttgcgatacaattcagattgtttatctaaatattatgatctaagactagctttgaac-aacctactatgatatataattactaaattgaca |
132 |
Q |
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|||||||||||| |||||||||||||| |||||||||||| | ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| | |
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| T |
27615752 |
tgttgaattttgtgatacaattcagatggtttatctaaatctcatgatttaagactagctttgaactaacctactatgatacataattactaatttgaaa |
27615653 |
T |
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| Q |
133 |
atttaaaagattgtgtaaagaaggtttacgcattaatatttatagttgttgtttttctgaatatgaaaactttcattccaaactttgtgtagttgtgtga |
232 |
Q |
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| T |
27615652 |
atttaaaggattatataa--gaggtttacacatta--gtttatcattattgtttttctgaatatgaaaa-tttcattccaaactttgtgtagttgtgtga |
27615558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 34504839 - 34504644
Alignment:
| Q |
34 |
tgttgaattttgcgatacaattcagattgtttatctaaatattatgatctaagactagctttgaac-aacctactatgatatataattactaaattgaca |
132 |
Q |
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|||||||||||| |||||||||||||| |||||||||||| | |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| | |
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| T |
34504839 |
tgttgaattttgtgatacaattcagatggtttatctaaatctcatgaagtaagactagctttgaactaacctactatgatacataattactaatttgaaa |
34504740 |
T |
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| Q |
133 |
atttaaaagattgtgtaaagaaggtttacgcattaatatttatagttgttgtttttctgaatatgaaaactttcattccaaactttgtgtagttgtgtga |
232 |
Q |
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| T |
34504739 |
atttacaggattatataa--gaggtttacgcatta--atttatcattattgtttttctgaatatgaaaa-tttcattccaaactttgtatagttgtgtga |
34504645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 34477249 - 34477161
Alignment:
| Q |
51 |
caattcagattgtttatctaaatattatgatctaagactagctttgaac-aacctactatgatatataattactaaattgacaatttaaa |
139 |
Q |
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|||||||||| |||| ||||||||| |||||||||| |||||| || | ||||| |||| || ||||||||||| ||||||| |||||| |
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| T |
34477249 |
caattcagatggtttctctaaatatcatgatctaagtctagctatggagtaacctgctattat-tataattactatattgacagtttaaa |
34477161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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