View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4291_low_3 (Length: 491)

Name: NF4291_low_3
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4291_low_3
NF4291_low_3
[»] chr1 (4 HSPs)
chr1 (1-477)||(37866017-37866515)
chr1 (260-477)||(37909411-37909650)
chr1 (2-129)||(37909201-37909330)
chr1 (260-400)||(37916584-37916711)
[»] scaffold0187 (7 HSPs)
scaffold0187 (260-477)||(29427-29666)
scaffold0187 (260-477)||(8187-8425)
scaffold0187 (260-477)||(18515-18753)
scaffold0187 (232-355)||(1135-1257)
scaffold0187 (2-130)||(8510-8638)
scaffold0187 (2-130)||(18838-18966)
scaffold0187 (2-129)||(29747-29876)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 37866017 - 37866515
Alignment:
Q  1 tcattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctataac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37866017 tcattttcacaacatagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctataac 37866116  T
Q  101 cagcaatttttggagatttgtcttgtcttcattttcttaggattcagatcccnnnnnnnnnnnnnnnnnnnnnntcagtgttattttttgttacataaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||    
T  37866117 cagcaatttttggagatttgtcttgtcttcattttcttaggattcagatcccaaaaagaaagaaaaaaattaaatcagtgttattttttgttacataaat 37866216  T
Q  201 ctgtgagtactcaatactactcaacactgatgccatactcttgtattacaaatcttgaaatggaataacaaccatctatatttgtgtaagattctacttt 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37866217 ccgtgagtactcaatactactcaacactgatgccatactcttgtattacaaatcttgaaatggaataacaaccatctatatttgtttaagattctacttt 37866316  T
Q  301 tcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagctttcagtctttagtctcaagaatcacctttttcaaaa----- 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  37866317 tcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagctttcagtctttagtctcaagaatcacctttttcaaaagtact 37866416  T
Q  396 -----------------gtcctttgtcagatcttaatacagagaatttaagatgtatcagatcttcaaagtattattattaattacaggatgataaaat 477  Q
                     ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||| |||||| ||||    
T  37866417 cttactattgctctcttgtcctttgtcagatcttaatacagagaatttattatgtatcggatcttcaaagtattataattaattacaagatgattaaat 37866515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 260 - 477
Target Start/End: Original strand, 37909411 - 37909650
Alignment:
Q  260 atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct 359  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37909411 atggaattgcaaccatctatatttgtataagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct 37909510  T
Q  360 ttcagtctttagtctcaagaatcacctttttcaaaa----------------------gtcctttgtcagatcttaatacagagaatttaagatgtatca 437  Q
    ||||||||||||||||||||||||||||||||||||                      ||||||||| ||||||||||||||||||||||| || |||||    
T  37909511 ttcagtctttagtctcaagaatcacctttttcaaaagtactcttactattgctttcttgtcctttgtaagatcttaatacagagaatttaatatttatca 37909610  T
Q  438 gatcttcaaagtattattattaattacaggatgataaaat 477  Q
     |||||||||||||||| |||||||||| |||||| ||||    
T  37909611 aatcttcaaagtattataattaattacaagatgattaaat 37909650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 37909201 - 37909330
Alignment:
Q  2 cattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctata--a 99  Q
    ||||||||||||| | ||||||  || || ||||||| || |||||||||   ||||||||||||||||||||||||||||||||| || | |||||  |    
T  37909201 cattttcacaacataacacgttacatatatcctccaaagtgaacaaagacaggtaaacatcatagaatttcaaaacataaggtatccacgtactatatga 37909300  T
Q  100 ccagcaatttttggagatttgtcttgtctt 129  Q
    |||||||||||||||| ||||| |||||||    
T  37909301 ccagcaatttttggagttttgttttgtctt 37909330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 37916584 - 37916711
Alignment:
Q  260 atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct 359  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |            ||||| |||||||| ||||||||||||||||||| |||||||||    
T  37916584 atggaattacaaccatctatatttgtgaaagattctactttttc------------aaagaattcctttt-gatggtttcataaccgattatttttagct 37916670  T
Q  360 ttcagtctttagtctcaagaatcacctttttcaaaagtcct 400  Q
    ||||||||| |  |||| |||||| |||||| |||||||||    
T  37916671 ttcagtcttcaaactcacgaatcaactttttgaaaagtcct 37916711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 260 - 477
Target Start/End: Complemental strand, 29666 - 29427
Alignment:
Q  260 atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct 359  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29666 atggaattgcaaccatctatatttgtataagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct 29567  T
Q  360 ttcagtctttagtctcaagaatcacctttttcaaaa----------------------gtcctttgtcagatcttaatacagagaatttaagatgtatca 437  Q
    ||||||||||||||||||||||||||||||||||||                      ||||||||| ||||||||||||||||||||||| || |||||    
T  29566 ttcagtctttagtctcaagaatcacctttttcaaaagtactcttactattgctttcttgtcctttgtaagatcttaatacagagaatttaatatttatca 29467  T
Q  438 gatcttcaaagtattattattaattacaggatgataaaat 477  Q
     |||||||||||||||| |||||||||| |||||| ||||    
T  29466 aatcttcaaagtattataattaattacaagatgattaaat 29427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 260 - 477
Target Start/End: Complemental strand, 8425 - 8187
Alignment:
Q  260 atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct 359  Q
    |||||||  ||||||||||||||||| ||||||||||||||| || ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  8425 atggaattgcaaccatctatatttgtataagattctactttttctgaaggaatcataaataattc-tttttgatggtttcataaccgattgtttttagct 8327  T
Q  360 ttcagtctttagtctcaagaatcacctttttcaaaa----------------------gtcctttgtcagatcttaatacagagaatttaagatgtatca 437  Q
    ||||||||||||||||||||| ||||||||||||||                      ||||||||| ||||||||||||||||||||||| || |||||    
T  8326 ttcagtctttagtctcaagaaccacctttttcaaaagtactcttactattgctttcttgtcctttgtaagatcttaatacagagaatttaatatttatca 8227  T
Q  438 gatcttcaaagtattattattaattacaggatgataaaat 477  Q
     |||||||||||||||| |||||||||| |||||| ||||    
T  8226 aatcttcaaagtattataattaattacaagatgattaaat 8187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 260 - 477
Target Start/End: Complemental strand, 18753 - 18515
Alignment:
Q  260 atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct 359  Q
    |||||||  ||||||||||||||||| ||||||||||||||| || ||||||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  18753 atggaattgcaaccatctatatttgtataagattctactttttctgaaggaatcataaataattcctttt-gatggtttcataaccgattgtttttagct 18655  T
Q  360 ttcagtctttagtctcaagaatcacctttttcaaaa----------------------gtcctttgtcagatcttaatacagagaatttaagatgtatca 437  Q
    ||||||||||||||||||||| ||||||||||||||                      ||||||||| ||||||||||||||||||||||| || |||||    
T  18654 ttcagtctttagtctcaagaaccacctttttcaaaagtactcttactattgctttcttgtcctttgtaagatcttaatacagagaatttaatatttatca 18555  T
Q  438 gatcttcaaagtattattattaattacaggatgataaaat 477  Q
     |||||||||||||||| |||||||||| |||||| ||||    
T  18554 aatcttcaaagtattataattaattacaagatgattaaat 18515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 232 - 355
Target Start/End: Complemental strand, 1257 - 1135
Alignment:
Q  232 gccatactcttgtattacaaatcttgaaatggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttg 331  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  | ||||||||| |||||    
T  1257 gccatactcttgtattacagattttgaaatggaataacaaccatctatatttgtgtaagattctactttttctcaagtaattttgaagagttcc-ttttg 1159  T
Q  332 atggtttcataaccgattgttttt 355  Q
    |||| |||| |||||||| |||||    
T  1158 atgggttcacaaccgattattttt 1135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 8638 - 8510
Alignment:
Q  2 cattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctataacc 101  Q
    ||||||||||||| | ||||||  ||||| ||||||| || ||||||||| | ||||||||||||||| ||||||||||||||||| || | ||||||||    
T  8638 cattttcacaacataacacgttacatgtatcctccaaagtgaacaaagacaagtaaacatcatagaatctcaaaacataaggtatccacgtactataacc 8539  T
Q  102 agcaatttttggagatttgtcttgtcttc 130  Q
    || ||||||||||| ||||||||||||||    
T  8538 agtaatttttggagttttgtcttgtcttc 8510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 18966 - 18838
Alignment:
Q  2 cattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctataacc 101  Q
    ||||||||||||| | ||||||  ||||| ||||||| || ||||||||| | ||||||||||||||| ||||||||||||||||| || | ||||||||    
T  18966 cattttcacaacataacacgttacatgtatcctccaaagtgaacaaagacaagtaaacatcatagaatctcaaaacataaggtatccacgtactataacc 18867  T
Q  102 agcaatttttggagatttgtcttgtcttc 130  Q
    || ||||||||||| ||||||||||||||    
T  18866 agtaatttttggagttttgtcttgtcttc 18838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 29876 - 29747
Alignment:
Q  2 cattttcacaacacagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcatagaatttcaaaacataaggtatcaacatgctata--a 99  Q
    ||||||||||||| | ||||||  || || ||||||| || |||||||||   ||||||||||||||||||||||||||||||||| || | |||||  |    
T  29876 cattttcacaacataacacgttacatatatcctccaaagtgaacaaagacaggtaaacatcatagaatttcaaaacataaggtatccacgtactatatga 29777  T
Q  100 ccagcaatttttggagatttgtcttgtctt 129  Q
    |||||||||||||||| ||||| |||||||    
T  29776 ccagcaatttttggagttttgttttgtctt 29747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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