View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291_low_5 (Length: 466)
Name: NF4291_low_5
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 7965658 - 7965880
Alignment:
| Q |
20 |
tattgctggtaggtgtggtttcatagggttttaatccattgcatttagaaattcnnnnnnncatataaagtaggttcagcttttgaccagaacaactgca |
119 |
Q |
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| T |
7965658 |
tattgctggtaggtgtggtttcatagggttttaatccattgcatttagaaattcaaaaaaacatataaagtaggttcagcttttgaccagaacaactgca |
7965757 |
T |
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| Q |
120 |
gttgtagtgtgtactgatgaacttttgtcaattattttcctagttacttaccattgcttagttttgaagggaaactttgcagttccttattaccctttta |
219 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7965758 |
gttgtagtgtgtactgatgaacttttctcaattattttcctagttacttaccattgcttagttttgaagggaaactttgcagttccttattaccctttta |
7965857 |
T |
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| Q |
220 |
ctacccaacgtttccaatgttaa |
242 |
Q |
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| T |
7965858 |
ctacccaacgtttccaatgttaa |
7965880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 7965947 - 7966077
Alignment:
| Q |
310 |
atatgtttagagttaataaccttgaaattaacaaggttagctatggtgagtctagggatgaaggtgactgaaagggagtgcttgctttttt-aaataata |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7965947 |
atatgtttagagttaataaccttgaaattaacaaggttaactatggtgagtctagggatgaaggtgactgaaagggagtgcttgcttttttaaaataata |
7966046 |
T |
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| Q |
409 |
aaaattaaagacaatataaacctcatatagt |
439 |
Q |
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| T |
7966047 |
aaaattaaagacaatataaacttcatatagt |
7966077 |
T |
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