View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4291_low_6 (Length: 432)

Name: NF4291_low_6
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4291_low_6
NF4291_low_6
[»] chr8 (7 HSPs)
chr8 (1-75)||(26174321-26174395)
chr8 (91-185)||(26174241-26174335)
chr8 (91-183)||(26175388-26175480)
chr8 (19-75)||(26175466-26175522)
chr8 (1-73)||(4676218-4676289)
chr8 (1-73)||(4678163-4678234)
chr8 (1-70)||(11080234-11080303)
[»] chr6 (10 HSPs)
chr6 (1-75)||(6860167-6860241)
chr6 (91-183)||(29427320-29427412)
chr6 (1-75)||(29427398-29427470)
chr6 (357-414)||(18887870-18887927)
chr6 (91-183)||(14618804-14618896)
chr6 (12-75)||(10774536-10774599)
chr6 (1-75)||(14618743-14618818)
chr6 (91-185)||(10774585-10774679)
chr6 (1-73)||(9231574-9231645)
chr6 (110-166)||(6825597-6825653)
[»] chr3 (11 HSPs)
chr3 (1-72)||(19439528-19439599)
chr3 (1-75)||(27825702-27825775)
chr3 (357-414)||(24724236-24724293)
chr3 (91-183)||(19439447-19439539)
chr3 (1-73)||(39091338-39091410)
chr3 (357-414)||(22499540-22499597)
chr3 (190-330)||(37511914-37512055)
chr3 (1-75)||(33785845-33785918)
chr3 (1-75)||(35610883-35610957)
chr3 (2-75)||(8504212-8504284)
chr3 (28-75)||(35240333-35240379)
[»] chr7 (9 HSPs)
chr7 (1-75)||(40772880-40772954)
chr7 (1-75)||(35130601-35130674)
chr7 (91-183)||(40772940-40773032)
chr7 (1-75)||(7737366-7737440)
chr7 (1-75)||(48821864-48821938)
chr7 (94-166)||(34510691-34510763)
chr7 (94-166)||(34512801-34512873)
chr7 (363-414)||(15871921-15871972)
chr7 (1-68)||(36647496-36647563)
[»] chr2 (5 HSPs)
chr2 (1-75)||(12015130-12015204)
chr2 (91-181)||(12015054-12015144)
chr2 (1-73)||(36316293-36316365)
chr2 (95-157)||(30866085-30866147)
chr2 (1-73)||(6016856-6016926)
[»] scaffold0263 (2 HSPs)
scaffold0263 (1-73)||(22967-23039)
scaffold0263 (133-183)||(22888-22938)
[»] chr5 (11 HSPs)
chr5 (1-75)||(25213825-25213898)
chr5 (1-75)||(25277975-25278048)
chr5 (1-75)||(27405315-27405388)
chr5 (357-414)||(33073600-33073657)
chr5 (1-73)||(31186000-31186070)
chr5 (93-183)||(4730581-4730672)
chr5 (16-73)||(39040562-39040619)
chr5 (8-75)||(43233880-43233947)
chr5 (1-73)||(35309156-35309228)
chr5 (94-154)||(41949405-41949465)
chr5 (94-154)||(41951803-41951863)
[»] chr1 (3 HSPs)
chr1 (357-414)||(48085063-48085120)
chr1 (1-75)||(9905799-9905871)
chr1 (1-75)||(9908190-9908262)
[»] chr4 (3 HSPs)
chr4 (1-75)||(27510492-27510566)
chr4 (1-75)||(13436443-13436516)
chr4 (91-126)||(13436502-13436537)
[»] scaffold0017 (1 HSPs)
scaffold0017 (20-75)||(183025-183080)
[»] scaffold0001 (1 HSPs)
scaffold0001 (110-166)||(144750-144806)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26174395 - 26174321
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26174395 acatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 26174321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 26174335 - 26174241
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaataat 185  Q
    |||||||||||||||||||||||||| |||||||||  | ||||||| ||||| ||||||||||||| ||| ||||||| ||||||| |||||||    
T  26174335 gtgaatattacaaatgatgaagttatcccactaatgaggttattacaagtatatatactactacaaactagtatctaacatatatctttaataat 26174241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 26175480 - 26175388
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 183  Q
    |||||||||||||||||||||||||| ||||||| || | |||||||  |||| ||||||||||||| ||| ||||||| |||||||||||||    
T  26175480 gtgaatattacaaatgatgaagttatcccactaaaggggttattacaattatatatactactacaaactagtatctaacatatatctctaata 26175388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 26175522 - 26175466
Alignment:
Q  19 gaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26175522 gaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 26175466  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4676289 - 4676218
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    |||||||||||| | |||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||    
T  4676289 acatgatatccacg-aaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaa 4676218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4678234 - 4678163
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    |||||||||||| | |||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||    
T  4678234 acatgatatccacg-aaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaa 4678163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11080303 - 11080234
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatatta 70  Q
    ||||||||||||| ||| |||||||| ||||||   | ||| ||| |||| |||||||||||||||||||    
T  11080303 acatgatatccaatgaaagaatgagaaaaaactcggagaatatttctattaatgataaaagtgaatatta 11080234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6860241 - 6860167
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6860241 acatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 6860167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 29427412 - 29427320
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 183  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||||||| || |||| |||||||||||||    
T  29427412 gtgaatattacaaatgatgaagttatcccactaatggggttattacaagtatatatactactacaaattagtatttaacatatatctctaata 29427320  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29427470 - 29427398
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  29427470 acatgatattcaaggaaggaatgagagaaaacttaaataatgtttgtattg--gataaaagtgaatattacaaat 29427398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 18887927 - 18887870
Alignment:
Q  357 atatcaacaatatatcttatgatgaattactagatatttttccaaccactcaaggtat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18887927 atatcaacaatatatcttatgatgaattactagatatttttccaaccactcaaggtat 18887870  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 14618804 - 14618896
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 183  Q
    ||||| |||||||||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  14618804 gtgaacattacaaatgatgaagttatcccactaatggggttattacaagtatatatactactacaaactagtatctaacatatatctctaata 14618896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 10774536 - 10774599
Alignment:
Q  12 aaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10774536 aaggaaagaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 10774599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 14618743 - 14618818
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatg-tttgtattgatgataaaagtgaatattacaaat 75  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||    
T  14618743 acatgatatccaaggaaggaatgaaagaaaactcaaataatgttttgtattgatgataaaagtgaacattacaaat 14618818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 10774585 - 10774679
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaataat 185  Q
    |||||||||||||||||||||||||| |||||||||  | ||||||| ||||| ||| ||||||||| | | ||||||| |||||||||||||||    
T  10774585 gtgaatattacaaatgatgaagttatcccactaatgaggttattacaagtatatatattactacaaactggtatctaacatatatctctaataat 10774679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9231645 - 9231574
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    |||||||||||  ||||| |||||||||| ||| ||| ||| ||| |||||||||||||||||||||||||||    
T  9231645 acatgatatccgtggaag-aatgagagaatactcaaagaatctttctattgatgataaaagtgaatattacaa 9231574  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 6825597 - 6825653
Alignment:
Q  110 aagttataccactaatggagatattacaggtatagatactactacaaattagaatct 166  Q
    ||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||    
T  6825597 aagttatcccactaatggggttattacaagtatatatactactacaaactagtatct 6825653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19439599 - 19439528
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattaca 72  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19439599 acatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattaca 19439528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27825702 - 27825775
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  27825702 acatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaat 27825775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 24724293 - 24724236
Alignment:
Q  357 atatcaacaatatatcttatgatgaattactagatatttttccaaccactcaaggtat 414  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24724293 atatcaacaatatatcttatgatgaattactagatatttttacaaccactcaaggtat 24724236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 19439539 - 19439447
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 183  Q
    |||||||||||| ||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| |||| || |||||||||||||    
T  19439539 gtgaatattacagatgatgaagttatcccactaatgggggtattacaagtatatatactactacaaactagtatctgacatatatctctaata 19439447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39091338 - 39091410
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    ||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||    
T  39091338 acatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgatagaagtgaatattacaa 39091410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 22499597 - 22499540
Alignment:
Q  357 atatcaacaatatatcttatgatgaattactagatatttttccaaccactcaaggtat 414  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22499597 atatcgacaatatatcttatgatgaattactagatattttttcaaccactcaaggtat 22499540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 37511914 - 37512055
Alignment:
Q  190 tataaactctggtagtatcgcaactgtgcataaaaaa--tctaaaaactgcatttacacatttaaattgtacattcaa-atgtgcaaaagtgctgaagaa 286  Q
    |||||||| || |||||| |||||  |||||||||||  | |||||| |||||||||| ||| ||||||||||||||| |||||||||||| ||||| ||    
T  37511914 tataaactgtgatagtattgcaaccatgcataaaaaaaatttaaaaattgcatttacagattcaaattgtacattcaagatgtgcaaaagtactgaaaaa 37512013  T
Q  287 catattttacacgattagatttagtacaattcaagtatgtgaaa 330  Q
    ||||||| ||||  ||||||||  |||||||| ||| |||||||    
T  37512014 catatttcacacatttagattt--tacaattctagtgtgtgaaa 37512055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33785918 - 33785845
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||||| |||||||||| |||||||    
T  33785918 acatgatatccaatgaaggaatgagagaaaactcaaacaatctttgtattgatgat-aaagtgaatagtacaaat 33785845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35610957 - 35610883
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| ||||||||||||||||||| ||| |||  || |||||||||||||| |||| |||||||||    
T  35610957 acatgatatccaatgaaggaatgagagaaaactcaaagaatacttctattgatgataaaattgaaaattacaaat 35610883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 8504212 - 8504284
Alignment:
Q  2 catgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||| ||||| |||||||||||||||||||| ||||||  ||| |||||||||| ||||||||||| ||||||    
T  8504212 catgaaatccatggaaggaatgagagaaaactcaaataagctttctattgatgat-aaagtgaatatcacaaat 8504284  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 35240379 - 35240333
Alignment:
Q  28 aaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  35240379 aaaactcaaataatgtttgtattgatgat-aaattgaatattacaaat 35240333  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40772880 - 40772954
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40772880 acatcatatacaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaat 40772954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35130674 - 35130601
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  35130674 acatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgat-aaagtgaatattacaaat 35130601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 40772940 - 40773032
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 183  Q
    |||||||||||||||||||||||||| ||||||||||   ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  40772940 gtgaatattacaaatgatgaagttatcccactaatgggattattacaagtatatatactactacaaactagtatctaacatatatctctaata 40773032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7737440 - 7737366
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| ||||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||||    
T  7737440 acatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaat 7737366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 48821864 - 48821938
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    |||||||||||| ||||| |||||||||||||| | | ||| ||| ||||||||||||| |||||||||||||||    
T  48821864 acatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaaat 48821938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 34510763 - 34510691
Alignment:
Q  94 aatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatct 166  Q
    |||||||||||||| |||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||    
T  34510763 aatattacaaatgaggaagttatcccactaatggggttattacaagtatatatactactacaaactagtatct 34510691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 34512873 - 34512801
Alignment:
Q  94 aatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatct 166  Q
    |||||||||||||| |||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||    
T  34512873 aatattacaaatgaggaagttatcccactaatggggttattacaagtatatatactactacaaactagtatct 34512801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 15871921 - 15871972
Alignment:
Q  363 acaatatatcttatgatgaattactagatatttttccaaccactcaaggtat 414  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  15871921 acaatatatctgatgatgaattaccagatattttttcaaccactcaaggtat 15871972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 36647496 - 36647563
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatat 68  Q
    ||||||||||||| ||| ||||||||||||||||| | ||| ||| |||||||||||||| |||||||    
T  36647496 acatgatatccaatgaaagaatgagagaaaacttagagaatatttctattgatgataaaaatgaatat 36647563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12015204 - 12015130
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  12015204 acatgatatccaaggaaagaatgagagaaaactcaaataatatttgtattgatgataaaagtgaatattacaaat 12015130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 12015144 - 12015054
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaa 181  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||| ||||| ||| ||||||||| ||| ||||||| |||||||||||    
T  12015144 gtgaatattacaaatgatgaagttatcccactaatggggttattacaagtatatatattactacaaactagtatctaacatatatctctaa 12015054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36316293 - 36316365
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    ||||||||||||| ||||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||    
T  36316293 acatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatgataaaagtgaatattacaa 36316365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 30866147 - 30866085
Alignment:
Q  95 atattacaaatgatgaagttataccactaatggagatattacaggtatagatactactacaaa 157  Q
    |||||||||||||  || |||| |||||||||| | ||||||| ||||| |||||||||||||    
T  30866147 atattacaaatgagaaaattattccactaatggggttattacaagtatatatactactacaaa 30866085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6016856 - 6016926
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    ||||||||||||| ||||||||| || |||||| | |  || ||| |||||||||||||||||||| ||||||    
T  6016856 acatgatatccaatgaaggaatgggaaaaaactcaga--atatttctattgatgataaaagtgaatgttacaa 6016926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23039 - 22967
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    ||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  23039 acatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatattacaa 22967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 22938 - 22888
Alignment:
Q  133 ttacaggtatagatactactacaaattagaatctaacgtatatctctaata 183  Q
    ||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  22938 ttacaagtatatatactactacaaactagtatctaacatatatctctaata 22888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25213898 - 25213825
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  25213898 acatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaaat 25213825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25278048 - 25277975
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  25278048 acatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaaat 25277975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27405315 - 27405388
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  27405315 acatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatggt-aaagtgaatattacaaat 27405388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 33073600 - 33073657
Alignment:
Q  357 atatcaacaatatatcttatgatgaattactagatatttttccaaccactcaaggtat 414  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33073600 atatcaacaatatatcttatgatgaattattagatatttttccaaccactcaaggtat 33073657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31186000 - 31186070
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    ||||||||||||| |||||||||||||||||||   ||||| ||| |||||||||||||||||||||||||||    
T  31186000 acatgatatccaacgaaggaatgagagaaaact--cataatatttctattgatgataaaagtgaatattacaa 31186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 4730672 - 4730581
Alignment:
Q  93 gaatattacaaa-tgatgaagttataccactaatggagatattacaggtatagatactactacaaattagaatctaacgtatatctctaata 183  Q
    |||||||||||| |||||||||||| ||| ||||||   ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  4730672 gaatattacaaaatgatgaagttatcccattaatgggattattacaagtatatatactactacaaactagcatctaacatatatctctaata 4730581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 39040562 - 39040619
Alignment:
Q  16 aaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    |||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||    
T  39040562 aaggaatgagagaaaactaagagaatgtttctattgatgataaaagtgaatattacaa 39040619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 43233947 - 43233880
Alignment:
Q  8 atccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||| |||||||||||||||||||| ||| ||| ||| |||||||||||||  ||||||||||||||    
T  43233947 atccatggaaggaatgagagaaaactcaaagaatctttctattgatgataaagttgaatattacaaat 43233880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35309156 - 35309228
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaa 73  Q
    ||||||||||||| |||||||||||| |||  | | | ||| ||| |||||||||||||||| ||||||||||    
T  35309156 acatgatatccaatgaaggaatgagaaaaatttcatagaatatttctattgatgataaaagtaaatattacaa 35309228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 41949405 - 41949465
Alignment:
Q  94 aatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactac 154  Q
    |||||||||||||| |||||||| |||||||||| | | |||||  |||| ||||||||||    
T  41949405 aatattacaaatgaggaagttatcccactaatggggttgttacaactatatatactactac 41949465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 41951803 - 41951863
Alignment:
Q  94 aatattacaaatgatgaagttataccactaatggagatattacaggtatagatactactac 154  Q
    |||||||||||||| |||||||| |||||||||| | | |||||  |||| ||||||||||    
T  41951803 aatattacaaatgaggaagttatcccactaatggggttgttacaactatatatactactac 41951863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 48085120 - 48085063
Alignment:
Q  357 atatcaacaatatatcttatgatgaattactagatatttttccaaccactcaaggtat 414  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48085120 atatcaacaatatatcttatgatgaattactagatattttttcaaccactcaaggtat 48085063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 9905799 - 9905871
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    |||||||||||||  |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  9905799 acatgatatccaac-aaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaat 9905871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 9908190 - 9908262
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    |||||||||||||  |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  9908190 acatgatatccaac-aaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaat 9908262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27510492 - 27510566
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    ||||||||||||| ||||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||||    
T  27510492 acatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaat 27510566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13436443 - 13436516
Alignment:
Q  1 acatgatatccaaggaaggaatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    |||||||||  ||| |||||||||||||||||| ||  | | ||| |||||||||||||||||||||||||||||    
T  13436443 acatgatatttaagaaaggaatgagagaaaactcaag-attatttttattgatgataaaagtgaatattacaaat 13436516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 13436502 - 13436537
Alignment:
Q  91 gtgaatattacaaatgatgaagttataccactaatg 126  Q
    |||||||||||||||||||||||||| |||||||||    
T  13436502 gtgaatattacaaatgatgaagttatcccactaatg 13436537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 183080 - 183025
Alignment:
Q  20 aatgagagaaaacttaaataatgtttgtattgatgataaaagtgaatattacaaat 75  Q
    |||||||||||||| || |||| ||| | |||||||||||||||||||||||||||    
T  183080 aatgagagaaaactcaagtaatctttcttttgatgataaaagtgaatattacaaat 183025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 144750 - 144806
Alignment:
Q  110 aagttataccactaatggagatattacaggtatagatactactacaaattagaatct 166  Q
    ||||||| |||||||||| | ||||||| ||||| ||||||||||||| ||| ||||    
T  144750 aagttatcccactaatggggttattacaagtatatatactactacaaactagtatct 144806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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