View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291_low_7 (Length: 410)
Name: NF4291_low_7
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 42936194 - 42936415
Alignment:
| Q |
19 |
gtaactatgtttatcaaaatcagaaaacttaaacctctttgtaatgtttagcatcaatgacttagaaggaggaagatgagaaagtggtggtcttccatgt |
118 |
Q |
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| T |
42936194 |
gtaactatgtttatcaaaatcagaaaacttaaacctctttgtaatgtttagcatcaatgacttagaaggaggaagatgagaaagtggtggtcttccatgt |
42936293 |
T |
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| Q |
119 |
gctaactccaaagctgttatcccaaaagaccagatatcagctttgaaactgtaaccattatgagagtgaataacctcaggagccatccaataaggtgttc |
218 |
Q |
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| T |
42936294 |
gctaactccaaagctgttatcccaaaagaccagatatcagctttgaaactgtaaccattatgagagtgaataacctcaggagccatccaataaggtgttc |
42936393 |
T |
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| Q |
219 |
cagcaaaatcagtaaatatatg |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
42936394 |
cagcaaaatcagtaaatatatg |
42936415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 42936456 - 42936577
Alignment:
| Q |
281 |
catgctcctacagagttgtttgattcataaatggaagcagaaacaccaaaatctgcaagtttcactaatccatttgagtcaacaaggatgttaccggatt |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42936456 |
catgctcctacagagttgtttgattcataaatggaagcagaaacaccaaaatctgcaagtttcactaatccatttgagtcaacaaggatgttaccagatt |
42936555 |
T |
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| Q |
381 |
tgatatctctatgatgatgtcc |
402 |
Q |
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|||||||||||||| ||||||| |
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| T |
42936556 |
tgatatctctatgaagatgtcc |
42936577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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