View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4291_low_8 (Length: 407)
Name: NF4291_low_8
Description: NF4291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4291_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 8039510 - 8039762
Alignment:
| Q |
1 |
tccaagtagcacttccatatatcaatggtgcacttcaccctgcatatgagcatcacaattattttcatcaaaagccttaatatgatgcaagtaaagagaa |
100 |
Q |
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| T |
8039510 |
tccaagtagcacttccatatatcaatggtgcacttcaccct----atgagcatcacaattattttcatcaaaagcgttaatatgatgcaagtaaagagaa |
8039605 |
T |
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| Q |
101 |
aatgaacactaaacatgatcacacactaaaatatatgccccgtatggcttagtgtgtttttgttcttgatttagactagttcgttgaatgtaaaatgaca |
200 |
Q |
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| T |
8039606 |
aatgaacattaaacatgatcacacactaaaatatgt--cccatatggcttagtgtgtttttgttcttgatttagactagttcgttgaatgtaaaatgaca |
8039703 |
T |
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| Q |
201 |
ttgtttagatacattcacacaaaacttaattgtccagcctatttgagaggcaaaatcac |
259 |
Q |
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| T |
8039704 |
ttgtttagatacattcacacaaaccttaattgtccagcctatttgagaggcaaaatcac |
8039762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 8027393 - 8027648
Alignment:
| Q |
1 |
tccaagtagcacttccatatatcaatggtgcacttcaccctgcatatgagcatcacaattattttcatcaaaagccttaatatgatgcaagtaaagagaa |
100 |
Q |
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| T |
8027393 |
tccaagtagcacttccatatatcaatggtacactttaccctgcat-tgagaatcacaattattttcatcaaaagcgttaatatgatgcaagtaaagagaa |
8027491 |
T |
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| Q |
101 |
aatgaacactaaacatgatcacacactaaaatatatgccccgtatggcttagtgtgtttttgttcttgatttagactagttcgttgaatgtaaaatgaca |
200 |
Q |
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| T |
8027492 |
aatgaacattaaacatgatcacacactaaaatatgt--cccatatggcttagtgtgtttttgttcttgatttagattagttagttgaatgtaaaatgaca |
8027589 |
T |
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| Q |
201 |
ttgtttagatacattcacacaaaacttaattgtccagcctatttgagaggcaaaatcac |
259 |
Q |
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| T |
8027590 |
tcgtttagatacattcacaaaaaacttaattgtccagccaatttgagagggaaaatcac |
8027648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 8039828 - 8039906
Alignment:
| Q |
325 |
atgattggatattt-cttaattgaagatagaatttgaaatttttgactcaataatttctttttacttgttcatctcact |
402 |
Q |
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| T |
8039828 |
atgattggatattttcttaattgaagatagtatttgaaatttttgactcaacaatttatttttacttgttcatctcact |
8039906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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