View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292-Insertion-1 (Length: 135)
Name: NF4292-Insertion-1
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292-Insertion-1 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 2e-53; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 27215436 - 27215308
Alignment:
| Q |
6 |
tttgtatttgtatatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaac |
105 |
Q |
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| T |
27215436 |
tttgtatttgtatatgcagtggttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaac |
27215337 |
T |
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| Q |
106 |
ctacagctatcaacgacaggtttcgagttg |
135 |
Q |
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| T |
27215336 |
ct-cagctatcaacgacaggtttcgagttg |
27215308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 27221398 - 27221270
Alignment:
| Q |
6 |
tttgtatttgtatatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaac |
105 |
Q |
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| T |
27221398 |
tttgtatttgtatatgcagtggttggaggagctaaggtgactttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaac |
27221299 |
T |
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| Q |
106 |
ctacagctatcaacgacaggtttcgagttg |
135 |
Q |
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| T |
27221298 |
ct-cagctatcaacgacaggtttcgagttg |
27221270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 27443463 - 27443593
Alignment:
| Q |
4 |
attttgtatttgtatatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaa |
103 |
Q |
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| T |
27443463 |
attttgtatttctttatgcagttgttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaa |
27443562 |
T |
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| Q |
104 |
acctacagctatcaacgacaggtttcgagttg |
135 |
Q |
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| T |
27443563 |
acct-cagctatcaacgacaggtttcgagttg |
27443593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 27208053 - 27207938
Alignment:
| Q |
18 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctacagctatca |
117 |
Q |
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| T |
27208053 |
tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggagaccaaaaacct-cagctatcg |
27207955 |
T |
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| Q |
118 |
acgacaggtttcgagtt |
134 |
Q |
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| T |
27207954 |
acaacgggttttgagtt |
27207938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 27433133 - 27433018
Alignment:
| Q |
18 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctacagctatca |
117 |
Q |
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| T |
27433133 |
tatgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggagaccaaaagcct-cagctatca |
27433035 |
T |
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| Q |
118 |
acgacaggtttcgagtt |
134 |
Q |
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| T |
27433034 |
acaacgggttttgagtt |
27433018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 27389334 - 27389232
Alignment:
| Q |
31 |
gaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctacagctatcaacgacaggtttcg |
130 |
Q |
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| T |
27389334 |
gaggagccacggtaacattcacgaatagatgtggatacaccgtatggccaggaaccttaaccggagaccaaaaacct-cagctatcaacaacaggtttcg |
27389236 |
T |
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| Q |
131 |
agtt |
134 |
Q |
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|||| |
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| T |
27389235 |
agtt |
27389232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 27410303 - 27410236
Alignment:
| Q |
18 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaac |
85 |
Q |
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| T |
27410303 |
tatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaac |
27410236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 27415756 - 27415821
Alignment:
| Q |
20 |
tgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaac |
85 |
Q |
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| T |
27415756 |
tgcagaggttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaac |
27415821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 27455277 - 27455170
Alignment:
| Q |
22 |
cagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctacagctatcaacga |
121 |
Q |
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| T |
27455277 |
cagtagttggaggagctaaggtgacattcaccaataagtgtgaataaattgtatgactagaaacgttaactagaga-caaaaacct-cagctatgaacga |
27455180 |
T |
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| Q |
122 |
caggtttcga |
131 |
Q |
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| T |
27455179 |
caagtttcga |
27455170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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