View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292-Insertion-2 (Length: 92)
Name: NF4292-Insertion-2
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292-Insertion-2 |
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| [»] chr8 (6 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 4e-44; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-44
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 1965307 - 1965396
Alignment:
| Q |
3 |
cagttttggtgactgggggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggtggaggttgctaaggtga |
92 |
Q |
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| T |
1965307 |
cagttttggtgactgggggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggtggaggttgctaaggtga |
1965396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 2011387 - 2011298
Alignment:
| Q |
3 |
cagttttggtgactgggggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggtggaggttgctaaggtga |
92 |
Q |
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| T |
2011387 |
cagttttggtgactgagggccttaaagtgggactgaggccaagagttaacgaaaatggtattgtcgaaagggtggaggttgctaaggtga |
2011298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 2437051 - 2437138
Alignment:
| Q |
5 |
gttttggtgactgggggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggtggaggttgctaaggtga |
92 |
Q |
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| T |
2437051 |
gttttgttgagtgagggactaaaagtgggactgaggccaagagttcatgaaaatggcattgtggaaagggtagaggttgctaaggtga |
2437138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 1969266 - 1969338
Alignment:
| Q |
20 |
ggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggtggaggttgctaaggtga |
92 |
Q |
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| T |
1969266 |
ggcctaaaagtgggactgaggccaagagttaatgaaaacggcattgtggaaagagaagaggttgttaaggtga |
1969338 |
T |
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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 1963654 - 1963709
Alignment:
| Q |
20 |
ggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggt |
75 |
Q |
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| T |
1963654 |
ggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggt |
1963709 |
T |
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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 2007749 - 2007683
Alignment:
| Q |
26 |
aaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggtggaggttgctaaggtga |
92 |
Q |
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| T |
2007749 |
aaagtgggactgagggcaagtgttaatgaaaatggcatagtggaaagggtagaggttgctaaggtga |
2007683 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 5906313 - 5906386
Alignment:
| Q |
19 |
gggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggtggaggttgctaaggtga |
92 |
Q |
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| T |
5906313 |
gggcctaaaggtgggagtgaggccaagagttaatgaaaatggcattgtggaaaggatagaggtttctaaggtga |
5906386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 5902829 - 5902884
Alignment:
| Q |
19 |
gggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaaggg |
74 |
Q |
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| T |
5902829 |
gggccttaaagtgggactgaggccaagggttaatgataatggcattgttgaaaggg |
5902884 |
T |
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