View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_high_10 (Length: 270)
Name: NF4292_high_10
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 51286054 - 51285908
Alignment:
| Q |
104 |
atcacgacctttattttatttgaatttacatcgaaactcacatgccgaatatttagttatataataatgatttatttccgtaactattattattctgtta |
203 |
Q |
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| T |
51286054 |
atcacgacctttattttatttgaatttgcatcgaaactcacatgccgaatatttagttatataataatgatttatttccgtaactat---tattctgtta |
51285958 |
T |
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| Q |
204 |
ctattttcgtggactctattctcttcaccatccctcttttatttattcat |
253 |
Q |
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| T |
51285957 |
ctattttcgtggactctattctcttcaccatccctcttttatttattcat |
51285908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 51286182 - 51286127
Alignment:
| Q |
20 |
ggttctctatcacagattttgttcaacatcaagttcacggcaaccccatcactacc |
75 |
Q |
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| T |
51286182 |
ggttctctatcacagattttgttcaacatcaagttcacggcaaccccatcactacc |
51286127 |
T |
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