View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4292_high_4 (Length: 404)

Name: NF4292_high_4
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4292_high_4
NF4292_high_4
[»] chr8 (3 HSPs)
chr8 (138-395)||(1182077-1182334)
chr8 (1-91)||(1182340-1182430)
chr8 (83-390)||(18194053-18194360)
[»] chr3 (2 HSPs)
chr3 (4-391)||(8169434-8169821)
chr3 (10-390)||(32369106-32369486)
[»] chr1 (1 HSPs)
chr1 (83-390)||(4959145-4959452)
[»] scaffold0105 (1 HSPs)
scaffold0105 (292-374)||(17071-17153)
[»] chr4 (2 HSPs)
chr4 (292-374)||(8190496-8190578)
chr4 (26-87)||(50935197-50935258)
[»] chr7 (1 HSPs)
chr7 (17-69)||(13829332-13829384)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 138 - 395
Target Start/End: Complemental strand, 1182334 - 1182077
Alignment:
Q  138 tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1182334 tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttc 1182235  T
Q  238 taatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182234 taatcttgccactagtgcaaacacttcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca 1182135  T
Q  338 tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182134 tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg 1182077  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1182430 - 1182340
Alignment:
Q  1 ttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatccataaagtgtcttatgcagttcgtataccatatgc 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182430 ttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatccataaagtgtcttatgcagttcgtataccatatgc 1182340  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 390
Target Start/End: Complemental strand, 18194360 - 18194053
Alignment:
Q  83 accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaat 182  Q
    ||||||||||||||  |  |||||||||||||||| ||||| |||| ||| ||  | ||||| | | ||||||| |  |||  |||||| ||||||||||    
T  18194360 accatatgctccttcccacttacttcaaatcctggtggttgtgtaatatacactttctcttcaagtggtccattcagaaatgcagactttacatctaaat 18194261  T
Q  183 gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccata 282  Q
    |  | | |||||| || ||||||||  | | ||| || ||||||||   | |||||| ||| || ||| | ||||| || |||||||| |||||||||||    
T  18194260 gtgatagtgaccagtttttactgcttgcaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtcaacaccata 18194161  T
Q  283 tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt 382  Q
    |||||| ||||| |||||||||||||  || ||||||| ||| || | ||  ||||| ||||||| ||| ||||||||||| ||||| ||||||||||||    
T  18194160 tctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttcaccttgaaaatccatttaacatcaatggtt 18194061  T
Q  383 ttcttctt 390  Q
    ||||||||    
T  18194060 ttcttctt 18194053  T

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Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 4 - 391
Target Start/End: Original strand, 8169434 - 8169821
Alignment:
Q  4 aatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatccataaagtgtcttatgcagttcgtataccatatgctcctttactttt 103  Q
    ||||| |||||  |||||||  ||||||||| |||||| ||||| ||| || ||||||||||  ||||| | || ||| |||||||||||| || || |     
T  8169434 aatcatgaactagtcaattctcttgttccatgctctagaagcctacttaaagccataaagtgatttatgtaatttgtacaccatatgctcccttcctctg 8169533  T
Q  104 acttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttac 203  Q
    | |||||||| | |||||| ||||||||||| | ||||||| ||||||||||||| ||||  |||||| |||||||||||||||||||||||||||||||    
T  8169534 atttcaaatcttagaggttcagtaacatatatagtttcttccaatagtccatttaggaatgcagactttacatctaaatgaaacaatgaccatttcttac 8169633  T
Q  204 tgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagc 303  Q
    ||||   |||||||| ||||||||||    ||||||  ||||  ||| ||||||| ||||||||||| ||||   |||||   || ||||||||||||||    
T  8169634 tgctggttaatgcaataaccaatctcaatatttctatccttgatactggtgcaaagacttcattatagtcaatttcatattaatgtaggaagcctctagc 8169733  T
Q  304 cactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttc 391  Q
     ||||| ||||||||||| ||||||| |||| ||| |||||||| ||| || |||||||| |||||||||| |||| |||||||||||    
T  8169734 tactagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgactttgaaaatccatttcacattaatgtttttcttcttc 8169821  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 390
Target Start/End: Original strand, 32369106 - 32369486
Alignment:
Q  10 gaactgatcaattcatttgttccattctctaggagcctgcttcaatccataaagtgtcttatgcagttcgtataccatatgctcctttacttttacttca 109  Q
    |||||||||||| |  ||||||||| ||||||| |  || ||||| ||||||||||  || || |  | ||| |||| |||||||||  |||||||||||    
T  32369106 gaactgatcaatcctcttgttccatgctctaggtgtttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttca 32369205  T
Q  110 aatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctat 209  Q
    ||| | || ||||| |||||||| | |  |||||||||| ||||||| |  |||  |||||| ||||||| |||| | |||||||| ||||| || |       
T  32369206 aattcaggtggttgtgtaacatacatatcttcttctaatggtccattcagaaatgcagacttaacatctatatgagataatgaccaattcttgctacagg 32369305  T
Q  210 ctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactag 309  Q
    | | ||| || ||||||||   | |||||||| | || ||| | ||||| || |||||||| ||||||||||||||||  | ||| ||||| || || |     
T  32369306 ccagtgccaccaccaatcttatagtttctaatttagctactggagcaaatacctcattatagtcaacaccatatctctataagaaacctctggcaaccaa 32369405  T
Q  310 ccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttctt 390  Q
     || ||||||| ||| |||| ||   |||| ||||||| ||| || |||||||| ||||| ||||||||||||||||||||    
T  32369406 tctggctttgtatttggaaaatgattcatcaggattcaatttcactttgaaaatccatttaacatcaatggttttcttctt 32369486  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 390
Target Start/End: Original strand, 4959145 - 4959452
Alignment:
Q  83 accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaat 182  Q
    ||||||||||||||| |  ||||||||||| |||| ||||| | || ||| |||  |||||| | | ||||||| |  |||  |||||| ||||||||||    
T  4959145 accatatgctcctttccacttacttcaaatactggtggttgtgcaatatacacatcttcttcaagtggtccattcagaaatgcagactttacatctaaat 4959244  T
Q  183 gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccata 282  Q
    |  | |||||||| || ||||||||  | | ||| || ||||||||   | |||||| ||| || ||| | ||||| || |||||||| || ||||||||    
T  4959245 gtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtctacaccata 4959344  T
Q  283 tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt 382  Q
    |||||| ||||| |||||||| ||||  || ||||||| ||| || | ||  |||||  |||||| ||| ||||||||||| ||||| ||||||||||||    
T  4959345 tctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaatccatttaacatcaatggtt 4959444  T
Q  383 ttcttctt 390  Q
    ||||||||    
T  4959445 ttcttctt 4959452  T

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Target: scaffold0105 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
Q  292 gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat 374  Q
    ||||||| |||| |||| |||||||||||| ||||||| |||||||| || |||||  || || |||||||| ||||| ||||    
T  17153 gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat 17071  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
Q  292 gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat 374  Q
    ||||||| |||| |||| |||||||||||| ||||||| |||||||| || |||||  || || |||||||| ||||| ||||    
T  8190578 gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat 8190496  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 50935258 - 50935197
Alignment:
Q  26 ttgttccattctctaggagcctgcttcaatccataaagtgtcttatgcagttcgtataccat 87  Q
    ||||||||| |||||||||||||||| |||||||| | ||  |||||||||| ||| |||||    
T  50935258 ttgttccatgctctaggagcctgctttaatccatataatgctttatgcagtttgtacaccat 50935197  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 13829332 - 13829384
Alignment:
Q  17 tcaattcatttgttccattctctaggagcctgcttcaatccataaagtgtctt 69  Q
    ||||||| |||||||||  |||| || ||||||||||||||||| ||||||||    
T  13829332 tcaattcttttgttccaagctcttggtgcctgcttcaatccatatagtgtctt 13829384  T

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