View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_high_5 (Length: 395)
Name: NF4292_high_5
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 33177493 - 33177862
Alignment:
| Q |
10 |
tcatcaaagattgatgaagtatttgatttttattatgaactaaatatatcaactttagttaacctgtttgtctttaataaaaaagactaaagggagtatt |
109 |
Q |
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| T |
33177493 |
tcatcaaagattgatgaagtatttgatttttattatgaactaaatatatcaactttagtcgacctgtttgtctttaataaaaaagacgaaagggagtatt |
33177592 |
T |
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| Q |
110 |
aattgcattttaccatttataccctctaattaacaatatatgtatcattcttatgttattattttcaactttgcatttaggataataagaatcagtcaaa |
209 |
Q |
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| T |
33177593 |
aattacattttaccatttataccctctaattaacaatatatgtatcattcttatgttattatttttaactttgcatttatgataataagaatcagtcaaa |
33177692 |
T |
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| Q |
210 |
tgaataattggtaaaattgtaattctctatcattaaactcagatcatcctgaatgattcgttatttagtgataatcatttgttatttagtaaaattcatt |
309 |
Q |
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| T |
33177693 |
tgaataattggtaaaattgtaattctctatcattaaactcagatcatcccgaatgattcgttttttagtgaaaatcatttgttatttagtaaaattcatt |
33177792 |
T |
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| Q |
310 |
aactatttaagttcaattatttagttaatgttttttaatacgtgtgaaacaactaactatgacaattttt |
379 |
Q |
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| T |
33177793 |
aactatttaagttcaattatttagttaatgttttttaacacgtgtgaaacaactaactatgacaattttt |
33177862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 30028274 - 30028211
Alignment:
| Q |
30 |
atttgatttttattatgaactaaatatatcaactttagttaacctgtttgtctttaataaaaaa |
93 |
Q |
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| T |
30028274 |
atttgatctatattatgaactaaataaatcaacttttgttgacctatttatcttttataaaaaa |
30028211 |
T |
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