View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4292_high_6 (Length: 344)
Name: NF4292_high_6
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 2939236 - 2939563
Alignment:
| Q |
1 |
gaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttcatcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939236 |
gaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttcatcatttg |
2939335 |
T |
|
| Q |
101 |
atgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagattcaaatggggtggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939336 |
atgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagattcaaatggggtggtt |
2939435 |
T |
|
| Q |
201 |
gtgaagatttttcgagctccggagagggaattgaagcgggagtaggttgcaatgaggcgggcggataagaaggaagaatggtgggtggttgtgaggatta |
300 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939436 |
gtgaagatttttcgagcttcggagatggaattgaagcgggagtaggttgcaatgaggcgggcggataagaaggaagaatggtgggtggttgtgaggatta |
2939535 |
T |
|
| Q |
301 |
attgggtgtgaatttgacgagcttgttg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2939536 |
attgggtgtgaatttgacgagcttgttg |
2939563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 11741087 - 11741258
Alignment:
| Q |
1 |
gaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttcatcatttg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11741087 |
gaacaattttacaatgaccaacacttccaattttcgaacaagacttaattatcaaaggtaatgtaaacccatcaggtaa--------------------- |
11741165 |
T |
|
| Q |
101 |
atgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagattcaaatgg |
193 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
11741166 |
atgataaagattaacaacataattatagtacccatgtgatacattggctctaatgataggattccatacaagatttgaaagggattcaaatgg |
11741258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 7294955 - 7294791
Alignment:
| Q |
1 |
gaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttcatcatttg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7294955 |
gaacaattttacaatgaccaacacttccaattttcgaacaagacttaattatcaaaggtaatgtaaacccattaggtaa--------------------- |
7294877 |
T |
|
| Q |
101 |
atgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagatt |
186 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
7294876 |
atgatatatattaacagcataattataatacccatgtgatacattggctctaatgatagaattacatacaagatttgaaagggatt |
7294791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6589537 - 6589366
Alignment:
| Q |
1 |
gaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttcatcatttg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6589537 |
gaacaattttacaatgaccaacacttccaattttcggacaagatttaattatcaaaggtaatataaacccatcaggtaaa-------------------- |
6589458 |
T |
|
| Q |
101 |
atgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagattcaaatgg |
193 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6589457 |
-tgataaagattaacatcataattataatacccatgtgatacattggctctaatgatagaattccatacaagatttgaaagggattcaaatgg |
6589366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University