View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4292_high_8 (Length: 296)

Name: NF4292_high_8
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4292_high_8
NF4292_high_8
[»] chr4 (1 HSPs)
chr4 (11-296)||(2938868-2939153)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 2938868 - 2939153
Alignment:
Q  11 cacagacaacacgacagccacagcttcaccactaatctcaattccctttattctcatcaccttaaacaactccgtagtttcatcaaaaagtccacatcta 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2938868 cacagacaacacgacagctacagcttcaccactaatctcaattccctttattctcatcaccttaaacaactccatagtttcatcaaaaagtccacatcta 2938967  T
Q  111 gcatgacttgacaaaagcgaagtccacgtcacataattcggctccaaaccctccaactccatccgtttaaaaaccctaaaggcgccaacataatcaaaat 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2938968 gcatgactcgacaaaagcgaagtccacgtcacataattcggctccaaaccctccaactccatccgtttaaaaaccctaaaggcgccaacataatcaaaat 2939067  T
Q  211 taaaagcataacccgaaaccaacgtattccacgacaatacacttctcacaaccattccatcaaacactttacatgcatcttccatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2939068 taaaagcataacccgaaaccaacgtattccacgacaatacacttctgacaaccattccatcaaacactttacatgcatcttccatt 2939153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University