View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_1 (Length: 669)
Name: NF4292_low_1
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 9 - 654
Target Start/End: Original strand, 49642613 - 49643258
Alignment:
| Q |
9 |
catcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49642613 |
catcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttgg |
49642712 |
T |
|
| Q |
109 |
atccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49642713 |
atccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaacc |
49642812 |
T |
|
| Q |
209 |
atggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49642813 |
atggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatcc |
49642912 |
T |
|
| Q |
309 |
atgcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttgattctctccgttatctttacggtcctgaatataattcc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49642913 |
atgcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttgattctctccgttatctttacggtcctgaatataattcc |
49643012 |
T |
|
| Q |
409 |
agtgaacaacacggtgttcatctttttcattttctgaccaaagaaaatcaccctgaaatatggaaccgtcattcgggtcatgatcattttcttgttatgg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49643013 |
agtgaacaacacggtgttcatctttttcattttctgaccaaagaaaatcaccctgaaatatggaaccgtcattcgggtcatgatcattttcttgttatgg |
49643112 |
T |
|
| Q |
509 |
cccgacccgcttgggatttcgctcagccgttggataatgatcctcatctttggggaacttcgtttcttgaattaccacagttttttaatgtaactgcgtt |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49643113 |
cccgacccgcttgggatttcgctcagccgttggataatgatcctcatctttggggaacttcgtttcttgaattaccacatttttttaatgtaactgcgtt |
49643212 |
T |
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| Q |
609 |
aactttggaatctcgtgcttggccttggcaagaacacgctgttcct |
654 |
Q |
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| T |
49643213 |
aactttggaatctcgtgcttggccttggcaagaacacgctgttcct |
49643258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 6623275 - 6623170
Alignment:
| Q |
223 |
aaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgtt-agaatat--ccatgcttaacgg |
319 |
Q |
| |
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|||||||||||| ||||||||||||| || || |||||||| ||||||||||||||| ||| ||| |||||||| ||||||| ||||||||||| |
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| T |
6623275 |
aaaacccataacagttcccatagttgacaca-aatcgacccatacatgcttgaactcatattcaatccccgtatgttaagaatatccccatgcttaacaa |
6623177 |
T |
|
| Q |
320 |
aagatcc |
326 |
Q |
| |
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||||||| |
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| T |
6623176 |
aagatcc |
6623170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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