View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_12 (Length: 346)
Name: NF4292_low_12
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 28278970 - 28279286
Alignment:
| Q |
12 |
gaagaaaatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgtta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28278970 |
gaagaaaatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcccattgagacaccggaatcttgtgaagttgtta |
28279069 |
T |
|
| Q |
112 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttcctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||| ||| |
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| T |
28279070 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttatgagtttatgcctaacggtagcctggattctcatttatttggtaaaagaatacctctttctt |
28279169 |
T |
|
| Q |
212 |
ggagtgtaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28279170 |
ggagtctaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
28279269 |
T |
|
| Q |
312 |
taatgttatgttagatt |
328 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
28279270 |
taatgttatgttagatt |
28279286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 28294716 - 28294402
Alignment:
| Q |
12 |
gaagaaaatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgtta |
111 |
Q |
| |
|
|||||||||||| | ||||| |||||||| |||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||| | || |
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| T |
28294716 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacataggaatcttgtgaagcttttg |
28294617 |
T |
|
| Q |
112 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttcctt |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
28294616 |
ggttggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttctt |
28294517 |
T |
|
| Q |
212 |
ggagtgtaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
311 |
Q |
| |
|
|| ||||||||||||||||||| |||| |||||| |||||| |||||||| |||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
28294516 |
ggggtgtaaggcacaaaatagctcttggattggcttctggtttgctttatctacatgaagaatgggagaggtgtgtggttcatagggatattaaatcaag |
28294417 |
T |
|
| Q |
312 |
taatgttatgttaga |
326 |
Q |
| |
|
||||||||||||||| |
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|
| T |
28294416 |
taatgttatgttaga |
28294402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 28264901 - 28264585
Alignment:
| Q |
12 |
gaagaaaatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgtta |
111 |
Q |
| |
|
|||||||||||| | || || |||||||| |||||||||||||| |||||||||||||| ||||| | ||||||| | |||||||||||| | | |
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|
| T |
28264901 |
gaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacatagaaatcttgtgaagcttctg |
28264802 |
T |
|
| Q |
112 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttcctt |
211 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||| ||||| ||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28264801 |
ggatggtgccatgataaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
28264702 |
T |
|
| Q |
212 |
ggagtgtaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
311 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
28264701 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
28264602 |
T |
|
| Q |
312 |
taatgttatgttagatt |
328 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
28264601 |
taatgttatgctagatt |
28264585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 28304918 - 28304602
Alignment:
| Q |
12 |
gaagaaaatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgtta |
111 |
Q |
| |
|
|||||||||||| | || || |||||||| |||||||||||||| |||||||||||||| ||||| | ||||||| |||||||||||||| | ||| |
|
|
| T |
28304918 |
gaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacataggaatcttgtgaagctctta |
28304819 |
T |
|
| Q |
112 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttcctt |
211 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||| |||| ||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
28304818 |
ggctggtgccatgacaaaggtgagtttctacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttctt |
28304719 |
T |
|
| Q |
212 |
ggagtgtaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
311 |
Q |
| |
|
|| ||||||||||||||||| | |||| |||||| |||||| |||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
28304718 |
ggggtgtaaggcacaaaataactcttggattggcctctggtttgctgtatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
28304619 |
T |
|
| Q |
312 |
taatgttatgttagatt |
328 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
28304618 |
taatgttatgctagatt |
28304602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 28288835 - 28289151
Alignment:
| Q |
12 |
gaagaaaatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgtta |
111 |
Q |
| |
|
|||||||||||| | || || ||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||| | ||| |
|
|
| T |
28288835 |
gaagaaaatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagttaaagttattagccagctgagacataggaatcttgtgaagctctta |
28288934 |
T |
|
| Q |
112 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttcctt |
211 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||| ||||| ||| |||| ||||| ||||||||||||||||| || ||||| ||||||||| ||| |
|
|
| T |
28288935 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttctt |
28289034 |
T |
|
| Q |
212 |
ggagtgtaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
311 |
Q |
| |
|
|||||||||| || |||||||| |||| |||||| | ||| || |||||| |||||||||||||||| | |||||||| ||||| ||||| |||||||| |
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|
| T |
28289035 |
ggagtgtaagacataaaatagctcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaag |
28289134 |
T |
|
| Q |
312 |
taatgttatgttagatt |
328 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
28289135 |
taatgttatgctagatt |
28289151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 28341969 - 28341898
Alignment:
| Q |
256 |
ctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagat |
327 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| || ||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
28341969 |
ctttatttacatgaagagtgggaacaatgtgtagtgcatagagatattaagtcaagtaatgtaatgttagat |
28341898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 36934463 - 36934520
Alignment:
| Q |
254 |
tgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
311 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
36934463 |
tgctttatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaag |
36934520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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