View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_14 (Length: 341)
Name: NF4292_low_14
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 54546 - 54226
Alignment:
| Q |
13 |
gaagaagaatgtattctgttttgggacttagtgtgttgtcttggtttatatgtcacaacccatcaattataatagggttgaacaactagtagtctggatg |
112 |
Q |
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| T |
54546 |
gaagaagaatgtattctgttttgggacttagtgtgttgtcttggtttatatgtcacaacccatcaattataatagggttgaacaactagtagtttggatg |
54447 |
T |
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| Q |
113 |
aaatttaagttatctttagggcgctgtttttcctcagcccttaatatcaatcaacatcagttatgga--tataagtgtttggaaaagtcatcaaatttgt |
210 |
Q |
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| T |
54446 |
aaatttaagttatctttagggcgctgtttttcctcagcccttaatatcaatcaacatcagttatggatatataagtgtttggaaaagtcatcaaatttgt |
54347 |
T |
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| Q |
211 |
gccgtctggatgtgtgctttttgacaatttgtacagtccggatgcattatttttagcagtgagaaagaaacagtgatctttatcttgaatactaaatgtg |
310 |
Q |
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| T |
54346 |
gccgtctggatatgtgctttttgacaatttgtacagtccggatgcattatttttagcagtgagaaagaaacagtgatctttatcttgaatactaaatgtg |
54247 |
T |
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| Q |
311 |
gaagaggactgccacaggttc |
331 |
Q |
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| T |
54246 |
gaagaggactgccacaggttc |
54226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 33754197 - 33754087
Alignment:
| Q |
69 |
aacccatcaattataatagggttgaacaactagtagtctggatgaaatttaagttatctttagggcgctgtttttcctcagcccttaatatcaatcaaca |
168 |
Q |
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| T |
33754197 |
aacccatcaactataatagggttggacgactagtactctggatgaaattcaagttatctttagggcactg-ttttccttagcccttaa----catcaaca |
33754103 |
T |
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| Q |
169 |
tcagttatggatataa |
184 |
Q |
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||||||| |||||||| |
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| T |
33754102 |
tcagttacggatataa |
33754087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 33753944 - 33753868
Alignment:
| Q |
181 |
ataagtgtttggaaaagtcatcaaatttgtgccgtctggatgtgtgctttttgacaatttgtacagtccggatgcat |
257 |
Q |
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||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
33753944 |
ataagtgtttgcaaaattcatcaaatttgtgttgtctggatttgtgctttttgacaatttgtacggtctggatgcat |
33753868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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