View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4292_low_2 (Length: 633)
Name: NF4292_low_2
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 17 - 623
Target Start/End: Original strand, 35356476 - 35357082
Alignment:
| Q |
17 |
aaaactatggccatcaaagctcatccattattttcaatggttctagagtccactctaccctggatagcatcaccactactcttacttattctctttgccg |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
35356476 |
aaaactatgaccatcaaagctcatccattattttcaatggttctagagtccactctaccctggatagcatcaccactactcttacttatgctctttgccg |
35356575 |
T |
|
| Q |
117 |
gcaccttagtcatagtaacatgtttccgccttatccaaaagttccaacaccagagtttcctcacttccatctcgttgaacaatgtggagtcccagtccac |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35356576 |
gcaccttggtcatagtaacatgtttccgccttatccaaaagttccaacaccagagtttcctcacttccatctcattgaacaatgtggagtcccagtccac |
35356675 |
T |
|
| Q |
217 |
aatggtggaggtcccacacgtacacgcctatggcttggaaaagagtgttataaacaccattccctcgttcatctacaataccactaaatctatacaagat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
35356676 |
aatggtggaggtcccacacgtacacgcctatggcttggaaaagagtgttataaacaccattccctcgttcatctacaataccactaaacctatacaagat |
35356775 |
T |
|
| Q |
317 |
gaatctaatcatgagtgcaccatttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcacacactttccatctcgcttgca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35356776 |
gaatctaatcatgagtgcaccatttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcccacactttccatctcgcttgca |
35356875 |
T |
|
| Q |
417 |
ttgatgcttggcttcataaacaacctaattgtcctctatgtcgctcatgtcttcgtggtgatcagtttgataaatcccctttcaaacatatcatggcgga |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
35356876 |
ttgatgcttggcttcataaacaacctaattgtcctctatgtcgctcatgtcttcgttgtgatcattttgataagtcccctttcaaacatatcatggcgga |
35356975 |
T |
|
| Q |
517 |
tagaatccacccatcctttcacgaccacatgcctttccaaatctctcattctcactctgtaattcaatcagtggtggaaatcacactctgctccaacaat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35356976 |
tagaatccacccatcctttcacgaccacatgcctttccaaatctctcattctcactctgtaattcaatcagtggtggaaatcacactctgctccaacaat |
35357075 |
T |
|
| Q |
617 |
gatgatg |
623 |
Q |
| |
|
|| |||| |
|
|
| T |
35357076 |
gacgatg |
35357082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 623
Target Start/End: Original strand, 35351342 - 35351948
Alignment:
| Q |
17 |
aaaactatggccatcaaagctcatccattattttcaatggttctagagtccactctaccctggatagcatcaccactactcttacttattctctttgccg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||| |||||||| ||| |||||| |
|
|
| T |
35351342 |
aaaactatggccatcaaagctcatccattattttcaatggttctagggtttactctacccttgatagcatcactactactattacttatgctccttgccg |
35351441 |
T |
|
| Q |
117 |
gcaccttagtcatagtaacatgtttccgccttatccaaaagttccaacaccagagtttcctcacttccatctcgttgaacaatgtggagtcccagtccac |
216 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
35351442 |
gcgccttggtcatagtaacatgttaccgccttatccaaaggttccaacaccagagtttcctcactagcatctcgttgaacgatgtggagtcccagtccac |
35351541 |
T |
|
| Q |
217 |
aatggtggaggtcccacacgtacacgcctatggcttggaaaagagtgttataaacaccattccctcgttcatctacaataccactaaatctatacaagat |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35351542 |
aatggtggaggccccacacgtacacgcctgtggcttggaaaagagtgttataaacgctattccctcgttcatctacaataccactaaatctaaacaagat |
35351641 |
T |
|
| Q |
317 |
gaatctaatcatgagtgcaccatttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcacacactttccatctcgcttgca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| |
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|
| T |
35351642 |
gaatctaatcatgagtgcaccatttgcttggttgaatttgaaaacaatgattacattcgcaccctccctctttgttcccacattttccatctcgcttgca |
35351741 |
T |
|
| Q |
417 |
ttgatgcttggcttcataaacaacctaattgtcctctatgtcgctcatgtcttcgtggtgatcagtttgataaatcccctttcaaacatatcatggcgga |
516 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||| |||||||| |||| ||| ||| |||| |
|
|
| T |
35351742 |
ttgatgcttggcttcataaacaacctagctgtcctctttgtcgctcatgtcttcgttgtgatcaatttgataagtcccctttgaaacctatgatgtcgga |
35351841 |
T |
|
| Q |
517 |
tagaatccacccatcctttcacgaccacatgcctttccaaatctctcattctcactctgtaattcaatcagtggtggaaatcacactctgctccaacaat |
616 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
35351842 |
tagaatccacccctcctttcatgaccacatgcctttccaaatctctcattctcactctgtaattcaatcagtgatggaaatcacactctactccaacaat |
35351941 |
T |
|
| Q |
617 |
gatgatg |
623 |
Q |
| |
|
|| |||| |
|
|
| T |
35351942 |
gacgatg |
35351948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 338 - 462
Target Start/End: Original strand, 35374756 - 35374880
Alignment:
| Q |
338 |
atttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcacacactttccatctcgcttgcattgatgcttggcttcataaac |
437 |
Q |
| |
|
|||||||||| ||| |||||| ||||| || ||||| | || |||||||||||||| |||| |||||||||| |||||||| |||||||||| |||| |
|
|
| T |
35374756 |
atttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaa |
35374855 |
T |
|
| Q |
438 |
aacctaattgtcctctatgtcgctc |
462 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35374856 |
aacctaattgtcctctatgtcgctc |
35374880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 338 - 462
Target Start/End: Original strand, 35381010 - 35381134
Alignment:
| Q |
338 |
atttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcacacactttccatctcgcttgcattgatgcttggcttcataaac |
437 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||| | || |||||||||||||| || | |||||||||| ||||||| | | |||||||| ||||| |
|
|
| T |
35381010 |
atttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccagagtttccatctccgttgcattcaagattggcttcctaaac |
35381109 |
T |
|
| Q |
438 |
aacctaattgtcctctatgtcgctc |
462 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35381110 |
aacctaattgtcctctatgtcgctc |
35381134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 462
Target Start/End: Complemental strand, 41706270 - 41706173
Alignment:
| Q |
365 |
gattacattcgcactctccctctttgttcacacactttccatctcgcttgcattgatgcttggcttcataaacaacctaattgtcctctatgtcgctc |
462 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||| |||||||| ||||| | ||||||||||||||||||| | ||| |||| |||||||| |||||||| |
|
|
| T |
41706270 |
gattacgttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctc |
41706173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 339 - 534
Target Start/End: Original strand, 10696703 - 10696898
Alignment:
| Q |
339 |
tttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcacacactttccatctcgcttgcattgatgcttggcttcataaaca |
438 |
Q |
| |
|
|||| |||| ||||||| || |||||||| ||||||||| || ||||||||||| |||||||||||||||| ||||||||| || |||||| |||||| |
|
|
| T |
10696703 |
tttgtttggatgaatttaaagacaatgatcgcattcgcaccctgcctctttgttcccacactttccatctcgtttgcattgaagcatggcttagtaaaca |
10696802 |
T |
|
| Q |
439 |
acctaattgtcctctatgtcgctcatgtcttcgtggtgatcagtttgataaatcccctttcaaacatatcatggcggatagaatccacccatcctt |
534 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||| ||| |||||||||| |||||||||| |||| ||||||||| ||||||||| ||| ||||| |
|
|
| T |
10696803 |
acctaactgtcctatttgtcgctcatgtcttcgctgtgctcagtttgatcaatcccctttaaaacttatcatggctaatagaatccgcccctcctt |
10696898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 332 - 472
Target Start/End: Complemental strand, 40735868 - 40735728
Alignment:
| Q |
332 |
tgcaccatttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcacacactttccatctcgcttgcattgatgcttggcttc |
431 |
Q |
| |
|
|||||| |||| |||| |||||||||| | | |||| | ||||||| || ||||||||||| |||| ||||||| ||| |||||| || |||||||| |
|
|
| T |
40735868 |
tgcaccgtttgtttggatgaatttgaagagagtgatcatgttcgcacgcttcctctttgttcccacagtttccatgtcgtttgcatcgacgcttggctca |
40735769 |
T |
|
| Q |
432 |
ataaacaacctaattgtcctctatgtcgctcatgtcttcgt |
472 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40735768 |
ctaaacaacctagctgtcctctatgtcgctcatgtcttcgt |
40735728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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