View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_21 (Length: 240)
Name: NF4292_low_21
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35029748 - 35029510
Alignment:
| Q |
1 |
tacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgaggagggtaagatcattcttatac |
100 |
Q |
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| T |
35029748 |
tacagttgtgaacgacagttgcatcgagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgatgagggtaagatcattcttatac |
35029649 |
T |
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| Q |
101 |
ttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattcttgaatatcaattctacccaacatcagct |
200 |
Q |
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| T |
35029648 |
ttgttatgttgcttggaagactcaagaaattcaacacggatgcgggtaatccatggaaacttctctgattcttgaatatcaattctacccaacatcaact |
35029549 |
T |
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| Q |
201 |
ccgatttcacacaaatgtgtgatctatgatcgatttcat |
239 |
Q |
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| T |
35029548 |
ctgatttcacacaaatgtgtgatctatgatcgatttcat |
35029510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 34970451 - 34970281
Alignment:
| Q |
1 |
tacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgaggagggtaagatcattcttatac |
100 |
Q |
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||||||||||||||||| || |||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
34970451 |
tacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatgagggtaagatcattctcatac |
34970352 |
T |
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| Q |
101 |
ttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattc |
171 |
Q |
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| T |
34970351 |
ttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattc |
34970281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 34952596 - 34952406
Alignment:
| Q |
1 |
tacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgaggagggtaagatcattcttatac |
100 |
Q |
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||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
34952596 |
tacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaaaatggagtgatgagggtaagatcattctcatat |
34952497 |
T |
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| Q |
101 |
ttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattcttg---aatatcaattctac |
188 |
Q |
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| T |
34952496 |
ttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatgatcaatatcaattctac |
34952406 |
T |
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