View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_22 (Length: 237)
Name: NF4292_low_22
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 49542120 - 49542296
Alignment:
| Q |
47 |
ctagacatgatgaattttgacaagaacagaataatagagtggaaaaggaagggacgaaccggtatatattttgtgcatgcgagtagcagtgtattcgtcg |
146 |
Q |
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| T |
49542120 |
ctagacatgatgaattttgacaagaacagaataatagagtggaaaaggaaggaacgaaccggtatatattttgtgcatgcgagtagcagtgtattcgtcg |
49542219 |
T |
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| Q |
147 |
gtaaaggagggtagagtaatgttgtttgaaataagagcctctttgtcgacatctaaagaattaaaattgaaggtgct |
223 |
Q |
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| T |
49542220 |
gtaaaggagggtagagtaatgttgtttgaaataagagcctctttgtcgacatttgaagaattaaaattgaaggtgct |
49542296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 40918346 - 40918393
Alignment:
| Q |
149 |
aaaggagggtagagtaatgttgtttgaaataagagcctctttgtcgac |
196 |
Q |
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| T |
40918346 |
aaaggagtgtagagtaatgttggttgaattaagagcctctttgtcgac |
40918393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 41783112 - 41783168
Alignment:
| Q |
157 |
gtagagtaatgttgtttgaaataagagcctctttgtcgacatctaaagaattaaaat |
213 |
Q |
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| T |
41783112 |
gtagagaaaagttggttgaattaagagcctctttgtcgacctcagaagaattaaaat |
41783168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 2883215 - 2883157
Alignment:
| Q |
141 |
tcgtcggtaaaggagggtagagtaatgttgtttgaaataagagcctctttgtcgacatc |
199 |
Q |
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| T |
2883215 |
tcgtcggaaaaggagtgtagagtaatgttggttgaattaaaagcctctttgtcgacatc |
2883157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 3151349 - 3151404
Alignment:
| Q |
144 |
tcggtaaaggagggtagagtaatgttgtttgaaataagagcctctttgtcgacatc |
199 |
Q |
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| T |
3151349 |
tcggaaaaggagtgtagagtaatgttggttgaattaaaagcctctttgtcgacatc |
3151404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 29250782 - 29250726
Alignment:
| Q |
157 |
gtagagtaatgttgtttgaaataagagcctctttgtcgacatctaaagaattaaaat |
213 |
Q |
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| T |
29250782 |
gtagagaaatgtttgttgaattaagagcctctttgtcgacctcagaagaattaaaat |
29250726 |
T |
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