View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_23 (Length: 237)
Name: NF4292_low_23
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_23 |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13051648 - 13051868
Alignment:
| Q |
1 |
ttacattacggaacagcttgatttggtattacaacaagagcatcgcaaagtgattcttcgttacatatattgtcatcaggtaaatacacacctactttat |
100 |
Q |
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| T |
13051648 |
ttacattacgggacatcttgatttggtattcccacaagagcattgcaaagagattcttcattacatatattgtcatcaggtacatacacacctactttat |
13051747 |
T |
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| Q |
101 |
cattcaatttcaacaaaaaattacaatacatatatgcttcttttgcttattaaacatgaaatttaagatcaatttctttatttggtggtttcatttgaag |
200 |
Q |
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| T |
13051748 |
cattcaatttcaacaaaaatttacaatacatatatgcttcttttgcttattaaacatgaaatttaagatcaatttcttcatttggtggtttcatttgaag |
13051847 |
T |
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| Q |
201 |
aatgaagatggagggtggggt |
221 |
Q |
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| T |
13051848 |
aatgaagatggagggtggggt |
13051868 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 161879 - 161959
Alignment:
| Q |
2 |
tacattacggaacagcttgatttggtattacaacaagagcatcgcaaagtgattcttcgttacatatattgtcatcaggta |
82 |
Q |
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| T |
161879 |
tacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttactgtcaccaggta |
161959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 93443 - 93408
Alignment:
| Q |
185 |
gtggtttcatttgaagaatgaagatggagggtgggg |
220 |
Q |
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| T |
93443 |
gtggtttcatttgcagaatgaagatggagggtgggg |
93408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 93619 - 93578
Alignment:
| Q |
41 |
catcgcaaagtgattcttcgttacatatattgtcatcaggta |
82 |
Q |
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| T |
93619 |
catcgtaaagagattcttcgttacatatattgtcaccaggta |
93578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 5671763 - 5671717
Alignment:
| Q |
36 |
aagagcatcgcaaagtgattcttcgttacatatattgtcatcaggta |
82 |
Q |
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| T |
5671763 |
aagagtatcggaaagagattctccgttacatatattgtcatcaggta |
5671717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 5693565 - 5693519
Alignment:
| Q |
36 |
aagagcatcgcaaagtgattcttcgttacatatattgtcatcaggta |
82 |
Q |
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| T |
5693565 |
aagagtatcggaaagagattctccgttacatatattgtcatcaggta |
5693519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 5723806 - 5723760
Alignment:
| Q |
36 |
aagagcatcgcaaagtgattcttcgttacatatattgtcatcaggta |
82 |
Q |
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| T |
5723806 |
aagagtatcgaaaagagattctccgttacatatattgtcatcaggta |
5723760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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