View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4292_low_3 (Length: 560)

Name: NF4292_low_3
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4292_low_3
NF4292_low_3
[»] chr5 (1 HSPs)
chr5 (26-423)||(11235963-11236360)
[»] chr3 (3 HSPs)
chr3 (26-423)||(52610163-52610560)
chr3 (344-534)||(11761471-11761650)
chr3 (249-297)||(11761667-11761715)
[»] chr8 (4 HSPs)
chr8 (26-423)||(23482578-23482953)
chr8 (27-331)||(23473152-23473456)
chr8 (26-308)||(34905890-34906172)
chr8 (74-109)||(35799913-35799948)
[»] chr6 (2 HSPs)
chr6 (385-485)||(34959919-34960019)
chr6 (291-358)||(34960017-34960084)
[»] chr1 (1 HSPs)
chr1 (425-531)||(50127941-50128047)
[»] chr7 (1 HSPs)
chr7 (162-306)||(38645500-38645645)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 26 - 423
Target Start/End: Original strand, 11235963 - 11236360
Alignment:
Q  26 ttccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnn 125  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||            
T  11235963 ttccggtcaccataacttttccgtccggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaagccctcaatttatttt 11236062  T
Q  126 nnagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcc 225  Q
      |||||| |||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11236063 t-agattgaagaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcc 11236161  T
Q  226 tcatgatgtcagcaacaaaacct-tatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggggttcacctctaccgcaccggaaaagt 324  Q
    || |||||||||||||||||||  ||||||||||||||||| | |||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||    
T  11236162 tcgtgatgtcagcaacaaaacccctatgtttattttgcaatagtagcaactttgtcggcgaccaccgtgccggagttcacctctgccgcgccggaaaagt 11236261  T
Q  325 ggttgacggtcatttacttcatttttctccttctttgtgagtttcaccttccttccctcctctaaagtgtattgtaggagttttgtatacacattttcg 423  Q
    ||||||||| |||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11236262 ggttgacggccatttactccatttttctccttcttgttgagtttcatcttccttccctcctctaaagtgtattgtaggagttttgtatacgcattttcg 11236360  T

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Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 26 - 423
Target Start/End: Original strand, 52610163 - 52610560
Alignment:
Q  26 ttccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnn 125  Q
    ||||||||| ||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            
T  52610163 ttccggtcaacataaattttccgtccggcctcctttaaaatccccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaatttattta 52610262  T
Q  126 nnagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcc 225  Q
      ||||||||||| || || ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  52610263 t-agattggagaagtttaatttttgagatctcccccttctttcttgttttccggccaccgtgagttgccatttggaaaaccaaacccaccatattctttc 52610361  T
Q  226 tcatgatgtcagcaacaaaacct-tatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggggttcacctctaccgcaccggaaaagt 324  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||| ||||||||||    
T  52610362 tcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtcggcggccactgtgccggagttcacctctaccgcgccggaaaagt 52610461  T
Q  325 ggttgacggtcatttacttcatttttctccttctttgtgagtttcaccttccttccctcctctaaagtgtattgtaggagttttgtatacacattttcg 423  Q
    ||||||||| |||||||| |||||||||||||| |  ||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  52610462 ggttgacggccatttactccatttttctccttcgtgatgagtttcatcttcattccctcctctaaagtgcattgtaggagttttgtatactcattttcg 52610560  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 344 - 534
Target Start/End: Complemental strand, 11761650 - 11761471
Alignment:
Q  344 catttttctccttctttgtgagtttcaccttccttccctcctctaaagtgtattgtaggagttttgtatacacattttcgaattatatgttataggagta 443  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||           |||    
T  11761650 catttttctccttcttggtgagtttcatcttccttccctcctctaaagtgtattgtaggagttttgtatacggattttcggattat-----------gta 11761562  T
Q  444 tgaagtttcaataatatgggtgaaagatgagtacttagtggatacaattcgtgataaagaaaagggaagaattttaaaacttgactccatt 534  Q
    ||||||||||||||||||||||||||||| |||| || ||||||| ||| |||||| ||||||||||||||||||||||||| ||| ||||    
T  11761561 tgaagtttcaataatatgggtgaaagatgggtacctaatggatacgatttgtgatagagaaaagggaagaattttaaaacttaacttcatt 11761471  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 11761715 - 11761667
Alignment:
Q  249 tatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccgg 297  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||    
T  11761715 tatgtttattttgcaatcggagcaactttgtcagcaaccaccgtgccgg 11761667  T

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Target: chr8 (Bit Score: 180; Significance: 6e-97; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 26 - 423
Target Start/End: Complemental strand, 23482953 - 23482578
Alignment:
Q  26 ttccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnn 125  Q
    |||| |||||||||||| |||||||  |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||            
T  23482953 ttccagtcaccataacttttccgtctggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaagccctcaatttatttt 23482854  T
Q  126 nnagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcc 225  Q
      |||||| |||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23482853 t-agattgaagaagtttaatttttgagatct-ccccttctctcttgttttccggccaccgtgagttgccattggaaaaaccaaacccaccatattcttcc 23482756  T
Q  226 tcatgatgtcagcaacaaaa-ccttatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggggttcacctctaccgcaccggaaaagt 324  Q
    |||||||||||||||||||| || ||||||||||||||||| | |||||||||  |||||||||||||||                     ||||||| |    
T  23482755 tcatgatgtcagcaacaaaacccctatgtttattttgcaatagtagcaactttatcggcgaccaccgtgc---------------------cggaaaatt 23482677  T
Q  325 ggttgacggtcatttacttcatttttctccttctttgtgagtttcaccttccttccctcctctaaagtgtattgtaggagttttgtatacacattttcg 423  Q
    ||||||||  |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  23482676 ggttgacgaccatttactccatttttctccttcttggtgagtttcatcttccttccctcctctaaagtgtattgtaggagttttgtagacgcattttcg 23482578  T

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Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 27 - 331
Target Start/End: Complemental strand, 23473456 - 23473152
Alignment:
Q  27 tccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnnn 126  Q
    |||||||||||||||| |||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||             
T  23473456 tccggtcaccataactattccgtccggcctcctttaaaatccctgccaccaccgttgaattcctctcttcttcctctacaaaagccctcaatttattttt 23473357  T
Q  127 nagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcct 226  Q
     ||||||||||| || || ||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||    
T  23473356 -agattggagaagtttaatttttgagacttcccccttctctcttgttttccggccactgtgagttgccattgggaaaatcaaacccatcatattcttcct 23473258  T
Q  227 catgatgtcagcaacaaaacct-tatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggggttcacctctaccgcaccggaaaagtg 325  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||  || ||||||||    
T  23473257 catgatgtcagcaacaaaacctcgatgtttattttgcaattggagcaactttgtcggcgaccaccgtgccggagttcacctctaccgtgccagaaaagtg 23473158  T
Q  326 gttgac 331  Q
    ||||||    
T  23473157 gttgac 23473152  T

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Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 26 - 308
Target Start/End: Complemental strand, 34906172 - 34905890
Alignment:
Q  26 ttccggtcaccataactcttccgtccagcctcctttaaaattcccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaannnnnnnn 125  Q
    ||||||||||||||||| || ||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||||            
T  34906172 ttccggtcaccataactttttcgtccggcctcctttaaaatcccctccatcaccattgaattcctctcttcttcctctacaaaagccatcaatttttttt 34906073  T
Q  126 nnagattggagaacttaaaattttgagatcttccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcc 225  Q
      ||||||||||| || || ||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  34906072 t-agattggagaagtttaattttcgagatctcccccttctctcttgtttttcggccaccgtgagttgccattgagaaaaccaaacccaacatattcttcc 34905974  T
Q  226 tcatgatgtcagcaacaaaa-ccttatgtttattttgcaatcggagcaactttgccggcgaccaccgtgccggggttcacctct 308  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||| ||||||||| | ||||||||||    
T  34905973 tcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgttggcgatcaccgtgccagagttcacctct 34905890  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 35799913 - 35799948
Alignment:
Q  74 accaccattgaattcctctcttcttcctctacaaaa 109  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35799913 accaccattaaattcctctcttcttcctctacaaaa 35799948  T

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Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 385 - 485
Target Start/End: Complemental strand, 34960019 - 34959919
Alignment:
Q  385 tctaaagtgtattgtaggagttttgtatacacattttcgaattatatgttataggagtatgaagtttcaataatatgggtgaaagatgagtacttagtgg 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34960019 tctaaagtgtattgtaggagttttgtatacacattttcgaattatgtgctataggagtatgaagtttcaataatatgggtgaaagatgagtacctagtgg 34959920  T
Q  485 a 485  Q
    |    
T  34959919 a 34959919  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 34960084 - 34960017
Alignment:
Q  291 gtgccggggttcacctctaccgcaccggaaaagtggttgacggtcatttacttcatttttctccttct 358  Q
    ||||||| |||||||||||| || |||| |||||||||||| |||||||||||||| |||||||||||    
T  34960084 gtgccggagttcacctctactgcgccgggaaagtggttgacagtcatttacttcatatttctccttct 34960017  T

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Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 425 - 531
Target Start/End: Original strand, 50127941 - 50128047
Alignment:
Q  425 attatatgttataggagtatgaagtttcaataatatgggtgaaagatgagtacttagtggatacaattcgtgataaagaaaagggaagaattttaaaact 524  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||| |||||||    
T  50127941 attatgtgttataggcgtatgaagtttcaatagtgtgggtgaaagatgggtacctagtggatacagttcgtgatagagaaaagggaagaattataaaact 50128040  T
Q  525 tgactcc 531  Q
    |||||||    
T  50128041 tgactcc 50128047  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 306
Target Start/End: Original strand, 38645500 - 38645645
Alignment:
Q  162 ttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacct-tatgtttatttt 260  Q
    |||||||||  ||| |||||||||||||   || || ||||||| || |||||||| | ||||||  |||| ||  ||| ||||||| ||||||| |||     
T  38645500 ttctctcttacttttcggccaccgtgagccaccgtttggaaaactaatcccaccatctccttccttgtgatatctacaataaaacctctatgtttgtttc 38645599  T
Q  261 gcaatcggagcaactttgccggcgaccaccgtgccggggttcacct 306  Q
     ||||||||||||| ||| ||||||||||| ||||||  |||||||    
T  38645600 acaatcggagcaacattgtcggcgaccaccttgccggaattcacct 38645645  T

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