View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_4 (Length: 548)
Name: NF4292_low_4
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 142 - 533
Target Start/End: Complemental strand, 33224496 - 33224106
Alignment:
| Q |
142 |
attataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttgggaatgtgatgaga |
241 |
Q |
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| T |
33224496 |
attataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttgggaatgtgatgaga |
33224397 |
T |
|
| Q |
242 |
agagagatatagatgaatttaagtatagaatgaattttgagaaattgtgagtgtcgaaatatcattgttcattgaattatttgcatgattgtgcaaatta |
341 |
Q |
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| T |
33224396 |
agagagatatagatgaatttaagtatagaatgaattttgagaaattatgagtgtcgaaatatcattgttcattgaattatttgcatgattgtgcaaatta |
33224297 |
T |
|
| Q |
342 |
aatttacgataaaaataaatatatatttaagttaacgttgttgcgaaaacattatatattcaatgggaaatagttttcaccatgacctgaaagaaaatgg |
441 |
Q |
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| T |
33224296 |
aatttacgataaaaataaatatatatttaagttaacgttgttgcgaaaacattatatattcaatgggaaatagttttcaccatgacctgaaagaaaatgg |
33224197 |
T |
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| Q |
442 |
aagatttcttcgccatgagcagaaaataaatgtaggaaccaatgctcgtataagaatatatggagaaataggtatgatgcggacatcttatg |
533 |
Q |
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| T |
33224196 |
aagatttcttcg-catgagcagaaaataaatgtaggaaccaatgctcgtataagaatatatggagaaataggtatgatgcggacatcttatg |
33224106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 32 - 499
Target Start/End: Complemental strand, 33227523 - 33227055
Alignment:
| Q |
32 |
atatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatccttgctaattggctt-tcaagtatcctctagtcaag |
130 |
Q |
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||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| | || || ||| |||||||||| |
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| T |
33227523 |
atatatgtcaccttctatttaattcatatgcatggcataatattttcctttatatgtaatgctccttgctaaaagtctcctctcttatggtctagtcaag |
33227424 |
T |
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| Q |
131 |
gtatgtaacctattataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttggga |
230 |
Q |
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||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |
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| T |
33227423 |
gtatgtaacctattataatttcaggttgtggagttgtgtattttattaggaaaatatttcatgagactagagatggggtgatagatgtaatattttggga |
33227324 |
T |
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| Q |
231 |
atgtgatgagaagagagatatagatgaatttaagtatagaatgaattttgagaaattgtgagtgtcgaaatatcattgttcattgaatta---tttgcat |
327 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||| |
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| T |
33227323 |
atgtgatgagaagagagatagagatgaatttaagtgtagaatgaatgttgagaaattgtaagtgttgaaatatcattgttcattgaattatattttgcat |
33227224 |
T |
|
| Q |
328 |
gattgtgcaaattaaatttacgataaaaataaatatatatttaagttaacgttgttgcgaaaaca-ttatatattcaatgggaaatagttttcaccatga |
426 |
Q |
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||||||| ||||||||||||||||| ||| ||| | | | ||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||| |
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| T |
33227223 |
gattgtgaaaattaaatttacgatacaaa-aaaaaaaaaattaagttaacgttgttgtgaaaacatttacatattcaatgggaaatagtcttcgccatga |
33227125 |
T |
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| Q |
427 |
cctgaaagaaaatggaagatttcttcgccatgagcagaaaataaatgtaggaaccaatgctcgtataagaata |
499 |
Q |
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|||| ||||||||||||||||| ||| | ||| ||||| |||| |||||| |||||||||| ||||| |
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| T |
33227124 |
gctga---aaaatggaagatttcttaatcattaccaggaaatatatgtgggaaccggtgctcgtataggaata |
33227055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 33225372 - 33225234
Alignment:
| Q |
11 |
cagagaggagcaagttggcacatatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatccttgctaattggctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33225372 |
cagagaggagcaagttggcacatatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatgcttgctaattggctt |
33225273 |
T |
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| Q |
111 |
tcaagtatcctctagtcaaggtatgtaacctattataat |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
33225272 |
tcaagtatcctctagtcaaggtatgtaacctattataat |
33225234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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