View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_6 (Length: 517)
Name: NF4292_low_6
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 33882097 - 33882404
Alignment:
| Q |
21 |
agttcaaaccaactctagaacgcttaaaagaaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttggaccgatcacc |
120 |
Q |
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| T |
33882097 |
agttcaaaccaactctagaacgcttagaagaaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttgaaccgatcacc |
33882196 |
T |
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| Q |
121 |
taatgaaacgaagagaataatcaaacaaatgaaagatggaaaagaacttgttcttaaatgttctaatgaagacaaaatccagtggtggaattgttgttac |
220 |
Q |
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| T |
33882197 |
taatgaaacaaagagaataatcaaacaaatgaaagatggaaaagaacttgttctaaaatgttctaatgaagacaaaatccagtggtggaattgttggtac |
33882296 |
T |
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| Q |
221 |
aaaaaagcacagtatcaagaacagcttgaatcattggatgaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgattggattgg |
320 |
Q |
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| T |
33882297 |
aaaaaagcacagtatcaagaagaacttgaagcattggatgaaaagattaaaagattctttgatcttgatttgatagctcaaattgcaaggactggattgg |
33882396 |
T |
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| Q |
321 |
aaacacat |
328 |
Q |
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|||||||| |
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| T |
33882397 |
aaacacat |
33882404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 33866278 - 33866739
Alignment:
| Q |
21 |
agttcaaaccaactctagaacgcttaaaagaaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttggaccgatcacc |
120 |
Q |
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||||||||||||||||||| | ||| ||| || || ||||||||| |||||||||||||||||||||||||||||| ||||| ||||| | ||||| |
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| T |
33866278 |
agttcaaaccaactctagatagattagaagctacacttcaatcattaggaccattgatcaatcaaatagatgaactcaagaagaaattggatcattcacc |
33866377 |
T |
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| Q |
121 |
taatgaaacgaagagaataatcaaacaaatgaaagatggaaaagaacttgttcttaaatgttctaatgaagacaaaatccagtggtggaattgttgttac |
220 |
Q |
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| T |
33866378 |
caatgaaacaaaaacactgatcaaacaaatgaaagatggaaaagaacttgttctaaaatgttctaatgaagacaaaatccagtggtggaattgttgttac |
33866477 |
T |
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| Q |
221 |
aaaaaagcacagtatcaagaacagcttgaatcattggatgaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgattggattgg |
320 |
Q |
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| T |
33866478 |
aaaaaagcacagtatcaagaacaacttgaagcattggatgaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgactggattgg |
33866577 |
T |
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| Q |
321 |
aaacacatttggagattaaagagtttcgtgctgaaattcg-aag--tattcttgtgaggaatgaaaggattgaatt-agagaatatttgtcggcctcctg |
416 |
Q |
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| T |
33866578 |
aaacacttttggagattaaagagtttcgtgctgaatttagtaaggctaatgttgggagaagtgaaagagttgaattaagag-gtgtttgtttgccacctc |
33866676 |
T |
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| Q |
417 |
aaccacctggttttattgttgggttggatgagactttcaataagttgaaggagatattgttga |
479 |
Q |
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|||||||||||||||||||||||||||||| |||| ||| |||||||| || |||||||| |
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| T |
33866677 |
aaccacctggttttattgttgggttggatggtcctttgaatgagttgaagatgagattgttga |
33866739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 349 - 506
Target Start/End: Original strand, 33882446 - 33882609
Alignment:
| Q |
349 |
tgctgaaattcgaagtattcttgtgaggaatgaaaggattga------attagagaatatttgtcggcctcctgaaccacctggttttattgttgggttg |
442 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
33882446 |
tgctgaaattcgaagtgttcttgtgaggactgaaaggattgaatttgaattagagaatatttgtcggcctcctaaaccacctggttttattgttgggtcg |
33882545 |
T |
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| Q |
443 |
gatgagactttcaataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctg |
506 |
Q |
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| T |
33882546 |
gatgagactttcaataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctg |
33882609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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