View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_7 (Length: 439)
Name: NF4292_low_7
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 7212791 - 7213204
Alignment:
| Q |
19 |
aatacatttgtcaagaacattcttcaatctattcacaagaactttaactacaactttctacaaaacctcgtataaggttgtgagtctccaatcaattgat |
118 |
Q |
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| T |
7212791 |
aatacatttgtcaagaacattcttcaatctattcgcaagaactttaactacaactttctacaaaacctcgtataaggttgtgagtctccaatcaattgat |
7212890 |
T |
|
| Q |
119 |
tattctattatgagtttttctattattgttaatggttatgcagttgaaggtctatcaactcttattagacaagaagaagcatgagatggcattcatggta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7212891 |
tattctattatgagtttttctattattgttaatggttatgtagttgaagttctatcaactcttattagacaagaagaagcatgagatggcattcatggta |
7212990 |
T |
|
| Q |
219 |
acaatattttcaagaacacccttgtcatttctcattttctttctgtagattattgttttttgttcttgagcaccaacgacaaggaagttaaggtgatgaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7212991 |
acaatattttcaagaacacccttgtcatttctcatcttctttttgtagattattgttttttgttcttgagcaccaacgacaaggaagttaaggtgatgaa |
7213090 |
T |
|
| Q |
319 |
gaatgctatagaaaactatgaagcggcatttggcaaaacaattaagttccaataatcataannnnnnnnaacagaaaaatgttagacagacagagatttt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |
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| T |
7213091 |
gaatgctatagaaaactatgaagcggcatttggcaaaacaattaagttccaataatcataattttttttgacggaaaaatgttagacagacaaagatttt |
7213190 |
T |
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| Q |
419 |
gctaatattcttcg |
432 |
Q |
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||||||| |||||| |
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| T |
7213191 |
gctaatactcttcg |
7213204 |
T |
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