View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4292_low_8 (Length: 405)
Name: NF4292_low_8
Description: NF4292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4292_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 7097450 - 7097070
Alignment:
| Q |
18 |
gaattaataaatgaagatctttgttttgagtgatatggatatacatggttgatccaaagtttcaaataatggtagcaatcatatttatattgtggagaac |
117 |
Q |
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| T |
7097450 |
gaattaataaatgaagatctttgttttgagtgatatggatatacatggttgatccaaagtttcaaatcatggtagcaatcatatttatattgtggagaac |
7097351 |
T |
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| Q |
118 |
tgctgtcaaatgtggcttatgtgaccgtattacggttgcagacactcagaaaactagatgctgcagccaagattcaatcgccgaaattttnnnnnnnnnt |
217 |
Q |
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| T |
7097350 |
tgctgtcaaatgtggcttatgtgaccgtattacggttgcagaaactcagaaaactagatgctgcagccaagattcaatcgccgaaatttaaaaaaaaaat |
7097251 |
T |
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| Q |
218 |
cttgtttgcttgcgagtgcttagtagaactagtaaaaatttattgatttagtagaacaacaaaattttcaaaacaaagtagagagatagcttttcacaac |
317 |
Q |
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| T |
7097250 |
cttgtttgcttgtgagtgcttagtagaactagtaaaaatttattgatttagtagaacaacaaaattttcaaaacaaagtagagagatagcttttcacaac |
7097151 |
T |
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| Q |
318 |
cactaggagttgttgggtcacgaagggagcccgataatgattatgttagattaagcttgacttttcttacagttcttctca |
398 |
Q |
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| T |
7097150 |
cactaggagttgttgggtcacgaagggagcccgataatgattatgttagattaagcttgacttttcttacagttcttctca |
7097070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 32491925 - 32491954
Alignment:
| Q |
101 |
tttatattgtggagaactgctgtcaaatgt |
130 |
Q |
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| T |
32491925 |
tttatattgtggagaactgctgtcaaatgt |
32491954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 7583944 - 7584008
Alignment:
| Q |
237 |
ttagtagaactagtaaaaatttattgatttagtagaacaacaaaattttcaaaacaaagtagaga |
301 |
Q |
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| T |
7583944 |
ttagtagaattagtaaaaacatattggtttactataacatttaaattttcaaaacaaagtagaga |
7584008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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