View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4293-Insertion-3 (Length: 169)
Name: NF4293-Insertion-3
Description: NF4293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4293-Insertion-3 |
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| [»] scaffold1084 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 3e-40; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 2899239 - 2899152
Alignment:
| Q |
1 |
tgtctatccttctgaaacaaagtgttgatacgtggaatcccttggtcccatgagtcttccaaatcctcaagggtcaagcgcctattct |
88 |
Q |
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| T |
2899239 |
tgtctatccttctgaaacaaagtgttaatacgtggaatcccttggtcccatgagtcttccaaatcctcaagggtcaagcgcctattct |
2899152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 2891866 - 2891811
Alignment:
| Q |
114 |
acgccatctcataggtcatttttgtcctgcattgccaatcgctgttaggaccatga |
169 |
Q |
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| T |
2891866 |
acgccatctcataggtcatttttgtcctgcattgtcaatcgctgttaggaccatga |
2891811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 2877404 - 2877352
Alignment:
| Q |
117 |
ccatctcataggtcatttttgtcctgcattgccaatcgctgttaggaccatga |
169 |
Q |
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| T |
2877404 |
ccatctcataggtcatttttgtcctgcattgtcaatcgctattaagaccatga |
2877352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 2794307 - 2794362
Alignment:
| Q |
114 |
acgccatctcataggtcatttttgtcctgcattgccaatcgctgttaggaccatga |
169 |
Q |
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| T |
2794307 |
acgccatctcataggtcatttttgtcctgcattatcaatcgctgttaagactatga |
2794362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 3143412 - 3143451
Alignment:
| Q |
130 |
catttttgtcctgcattgccaatcgctgttaggaccatga |
169 |
Q |
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| T |
3143412 |
catttttgtcctgcattgtcaatcgctgttaggaccatga |
3143451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 2881188 - 2881159
Alignment:
| Q |
84 |
attcttgtgacatcaacacaaaatctttcc |
113 |
Q |
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| T |
2881188 |
attcttgtgacatcaacacaaaatctttcc |
2881159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44779586 - 44779641
Alignment:
| Q |
1 |
tgtctatccttctgaaacaaagtgttgatacgtggaatcccttggtcccatgagtc |
56 |
Q |
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| T |
44779586 |
tgtctatccttctgaaacaaagtgttgatacgtggtattcctctgtcccatgagtc |
44779641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39876354 - 39876409
Alignment:
| Q |
1 |
tgtctatccttctgaaacaaagtgttgatacgtggaatcccttggtcccatgagtc |
56 |
Q |
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| T |
39876354 |
tgtctatctttctgaaacaaagtgttaatacgtggaattcctctgtcccatgagtc |
39876409 |
T |
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Target: scaffold1084 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2566 - 2511
Alignment:
| Q |
1 |
tgtctatccttctgaaacaaagtgttgatacgtggaatcccttggtcccatgagtc |
56 |
Q |
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| T |
2566 |
tgtctatccttctgaaacaaagtgttaatacgtggtattcctctgtcccattagtc |
2511 |
T |
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