View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4293-Insertion-5 (Length: 237)
Name: NF4293-Insertion-5
Description: NF4293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4293-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 34330447 - 34330666
Alignment:
| Q |
6 |
aatctctcttatacacacacatgtatgcttctctaaaacccatgtctcttaaatgtgctgttcaactaaacattccagaaataatatataaccatggaaa |
105 |
Q |
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| T |
34330447 |
aatctctcttatacacacacatgtatgcatctctaaaacccatgtctctcaaatgtgctgttcaactaaacattccagaaataatatataaccatggaaa |
34330546 |
T |
|
| Q |
106 |
acctattactctctgtgacttagtttcaactctaaaagttccactagctaagtctagtcttgtcaaaagactcatgcgatttctagcacacatgggaatc |
205 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34330547 |
acccattactctccctgacttagtttcaactctaaaagttccactagctaagtctagtcttgtcaaaagactcatgcgatttctagcacacattggaatc |
34330646 |
T |
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| Q |
206 |
tttgcaatccatggcaaagg |
225 |
Q |
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|||||||||||||| ||||| |
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| T |
34330647 |
tttgcaatccatgggaaagg |
34330666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 34343048 - 34343270
Alignment:
| Q |
6 |
aatctctcttatacacacacatgtatgcttctctaaaacccatgtctcttaaatgtgctgttcaactaaacattccagaaataatatataaccatggaaa |
105 |
Q |
| |
|
||||||||||||||| ||||||| || || ||||||| ||||| |||||||||| ||| ||||||||||||||||||| ||||| || ||||||||||| |
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| T |
34343048 |
aatctctcttatacatgcacatgtttggttttctaaaatccatggctcttaaatgggctattcaactaaacattccagacataatctacaaccatggaaa |
34343147 |
T |
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| Q |
106 |
acctattactctctgtgacttagtttcaactctaaaagttccactagctaagtctagtcttgtcaaaagactcatgcgatttctagcacacatgggaatc |
205 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||| || |||| |||||||| ||||||||||||| ||||||||||||| ||||| |
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| T |
34343148 |
acctattactctctctgacttagtttcaactctacaagttccaatatctaaacaaagtcttgtggaaagactcatgcgttttctagcacacaatggaata |
34343247 |
T |
|
| Q |
206 |
tttgcaatccatggcaaaggtga |
228 |
Q |
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|||| |||||||| |||||||| |
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| T |
34343248 |
tttgtaatccatgagaaaggtga |
34343270 |
T |
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