View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4293_high_3 (Length: 271)
Name: NF4293_high_3
Description: NF4293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4293_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 42014301 - 42014541
Alignment:
| Q |
19 |
tctgacacactcgatagttacctcaccgatccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagt |
118 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
42014301 |
tctgacacactcgatagttacctcaccgacccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttgccgatgttgagt |
42014400 |
T |
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| Q |
119 |
ttggattctcaagacctgattttcgacaaagttctcttgttggtactgttcagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014401 |
ttggattctcaagacctgattttcgacaaagttctcttgttggtactgttgagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttg |
42014500 |
T |
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| Q |
219 |
gcctcctaggattgaagctgctgagtttgatcggttgccta |
259 |
Q |
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| T |
42014501 |
gcctcctaggattgaagctgctgagtttgatcggttgccta |
42014541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 1247529 - 1247769
Alignment:
| Q |
19 |
tctgacacactcgatagttacctcaccgatccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagt |
118 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1247529 |
tctgacacactcgatagttacctcactgacccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttgctgatgttgagt |
1247628 |
T |
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| Q |
119 |
ttggattctcaagacctgattttcgacaaagttctcttgttggtactgttcagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttg |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
1247629 |
ttggattctcaagacctgattttcggcaaagttctcttgttggtactgttgagttgtacgaacgacacgtgtttctatgttataagaatcccagattttg |
1247728 |
T |
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| Q |
219 |
gcctcctaggattgaagctgctgagtttgatcggttgccta |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1247729 |
gcctcctaggattgaagctgctgagtttgatcggttgccta |
1247769 |
T |
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