View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4293_low_1 (Length: 722)
Name: NF4293_low_1
Description: NF4293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4293_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 11 - 705
Target Start/End: Original strand, 10369982 - 10370666
Alignment:
| Q |
11 |
atcatcatcataaccttcttccaccagagccatgttccctttgaatattaaaataagcagcagcaactggcaatcccaaattgtaaagttctgcaaattc |
110 |
Q |
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| T |
10369982 |
atcatcatcataaccttcttccaccagagccatgttccctttgaatgttaaaataagcagcagcaactggcaatcccaaattgtaaagttctgcaaattc |
10370081 |
T |
|
| Q |
111 |
tctagtgttgaaattctgtcgccaacctggagcataaaccgtctctctaccaagttgacgaaaaatcacaaagacgatgcgatgaattcccatcgaaggt |
210 |
Q |
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| T |
10370082 |
tctagtgttgaaattctgtcgccaacctggagcataaaccgtctctctaccaagttgacgaaaaatcacaaagacgatgcgatgaattcccatcgaaggt |
10370181 |
T |
|
| Q |
211 |
cgtggactctcataagggaccacttcatgacctgtgaaaataatcatcaattcacaatcaatcatatgtgcgattttagaagtaattataaaaagctaat |
310 |
Q |
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| T |
10370182 |
cgtggactctcataagggaccacttcatgacctgtgaaaataatcatcaat-----------catatgtgtgattttagaagtaattataaaaagctaat |
10370270 |
T |
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| Q |
311 |
taactttt-ttaatgatttaacgatcgtgattggctggcagtgttatgaatcgaatcctacaataaattgtcattagcatgtattagggtttataatagg |
409 |
Q |
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| T |
10370271 |
taattttttttaatgatttaacgatcgtgattggctggcagtgttatgaatcgaatcctacaataaattgtcattagcatgtattagggtttataatagg |
10370370 |
T |
|
| Q |
410 |
tttcaattgagcatcaagcatcatctctgaatttgttcctatcaggattagtatatatcatagttattatattattatgaaccctaatatatgaagctta |
509 |
Q |
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| T |
10370371 |
tttcaattgagcatcaaccatcatctctgaatttgttcctattaggattagtatatatcatagttattatattattatgaaccctaatatatgaagctta |
10370470 |
T |
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| Q |
510 |
attatttcagaagactaaggttaggtgtataattgaagttttaaattgtggtaacggagtctgaattatgagattttcacagttgtgatggcatgcatat |
609 |
Q |
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| T |
10370471 |
attatttcagaagactaaggttaggtgtataattgaagttttaaattgtggtaacggagtctgaattatgagattttcacagttgtgatggcatgcatat |
10370570 |
T |
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| Q |
610 |
atcatatttatcccatcacatttttaccacatagatatctaagaagatagtttagaaactattataacaaagtgataaaatgatttgatatgatta |
705 |
Q |
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| T |
10370571 |
gtcatatttatcccatcacatttttaccacatagatatctaagaagataatttagaaactattataacaaagtgataaaatgatttgatatgatta |
10370666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 32845238 - 32845156
Alignment:
| Q |
68 |
cagcagcaactggcaatcccaaattgtaaagttctgcaaattctctagtgttgaaattctgtcgccaacctggagcataaacc |
150 |
Q |
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| T |
32845238 |
cagcagcaacaggtgatccaagattgtagagttcagcaaattctcttgtgttgaaattttgtcgccatcctggagcataaacc |
32845156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 45936057 - 45936011
Alignment:
| Q |
253 |
atcatcaattcacaatcaatcatatgtgcgattttagaagtaattat |
299 |
Q |
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|||| |||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
45936057 |
atcaacaattcacaatcaatcatatgtacgagtttagaagtagttat |
45936011 |
T |
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