View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4293_low_6 (Length: 254)

Name: NF4293_low_6
Description: NF4293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4293_low_6
NF4293_low_6
[»] chr3 (6 HSPs)
chr3 (25-253)||(8865415-8865643)
chr3 (25-253)||(11127114-11127343)
chr3 (54-253)||(10893057-10893256)
chr3 (86-253)||(11155989-11156158)
chr3 (86-253)||(11144811-11144983)
chr3 (25-63)||(11156188-11156226)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 8865415 - 8865643
Alignment:
Q  25 gtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatagtacttgctgtgttgtaacatacattttattacatattcagtataaat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  8865415 gtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatatttggtataaat 8865514  T
Q  125 aattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgtt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8865515 aattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgtt 8865614  T
Q  225 gtgtagtttacttgatgatgtccatctca 253  Q
    |||||| || |||| |||||| |||||||    
T  8865615 gtgtaggttgcttgctgatgttcatctca 8865643  T

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Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 253
Target Start/End: Complemental strand, 11127343 - 11127114
Alignment:
Q  25 gtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatagtacttgctgtgttgtaacatacattttattacatattcagtataaat 124  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11127343 gtgtgatactgaaaacttaatattacttttctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaat 11127244  T
Q  125 aattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgc-ttcttgt 223  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11127243 aattttattatgtggttgtatatctttcgcttcatcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgctttcttgt 11127144  T
Q  224 tgtgtagtttacttgatgatgtccatctca 253  Q
    ||||||| || |||| |||||| |||||||    
T  11127143 tgtgtaggttgcttgctgatgttcatctca 11127114  T

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Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 54 - 253
Target Start/End: Original strand, 10893057 - 10893256
Alignment:
Q  54 tctagattttataaaacgtaatagtacttgctgtgttgtaacatacattttattacatattcagtataaataattttattatgtggttgtatatctttcg 153  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10893057 tctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaataattttattatgtggttgtatatctttcg 10893156  T
Q  154 cttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtagtttacttgatgatgtccatctca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |||||||    
T  10893157 cttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtaggttgcttgctgatgttcatctca 10893256  T

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Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 11156158 - 11155989
Alignment:
Q  86 gtgttgtaacatacattttattacatattcagtata--aataattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccg 183  Q
    |||||||||||| ||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||| ||||||| | ||| |||||||| ||| ||     
T  11156158 gtgttgtaacattcattttattacatattcggtatataaataattttattatgcggttgtatatctttcacttcctcgtaaaattattcaagttccacca 11156059  T
Q  184 ctgcacttttccttttcctggactcatacttgcttcttgttgtgtagtttacttgatgatgtccatctca 253  Q
    |||| ||||  |||||||||| |||||||||| ||||||||||| || || |||| |||||| |||||||    
T  11156058 ctgctctttcgcttttcctggcctcatacttgtttcttgttgtgcaggttgcttgttgatgttcatctca 11155989  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 11144983 - 11144811
Alignment:
Q  86 gtgttgtaacatacattttattacatattcagtata--aataattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccg 183  Q
    |||||||||||| ||||||||||||||||  |||||  ||||||||||||||| ||||||||||||||| ||||||| | ||| |||||||| ||||||     
T  11144983 gtgttgtaacattcattttattacatatttggtatataaataattttattatgcggttgtatatctttcacttcctcgtaaaattattcaagttccgcca 11144884  T
Q  184 ctgcacttttccttttcctggactc---atacttgcttcttgttgtgtagtttacttgatgatgtccatctca 253  Q
    |||| ||||  ||||||||||||||   ||||||||||||||| |||||| || |||| |||||| |||||||    
T  11144883 ctgctctttcgcttttcctggactcataatacttgcttcttgtggtgtaggttgcttgctgatgttcatctca 11144811  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 11156226 - 11156188
Alignment:
Q  25 gtgtgatactgaaaacttaatagtacttttctagatttt 63  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  11156226 gtgtgatactgaaaacttactagtacttttcttgatttt 11156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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