View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_high_11 (Length: 384)
Name: NF4294_high_11
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 83 - 379
Target Start/End: Complemental strand, 31929732 - 31929436
Alignment:
| Q |
83 |
gaggagtaaccaagagagtgaggagaagggtgattaaatggagaagattaataactcgtgagatccatctaacgtggaaatatgtgcctagaaacaaaat |
182 |
Q |
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| T |
31929732 |
gaggagtaaccaagagagtgaggagaagggtgattaaatggagaagattaataactcgtgagatccatctaacgtgaaaatatgtgcctagaaacaaaat |
31929633 |
T |
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| Q |
183 |
tgaatctcttaaattaaatnnnnnnnnttataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctaccataaagg |
282 |
Q |
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| T |
31929632 |
tgaatctcttaaattaaataaaaaaaattataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctaccataaagg |
31929533 |
T |
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| Q |
283 |
atccatgctaaggataaattaagaattgcatatatgtatataataaatgaatgtaaattaagttgcagatttatattgaaggtatacctttgctact |
379 |
Q |
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| T |
31929532 |
atccatgctaaggataaattaagaattgcatatatgtatataataaatgaatgtaaattaagttgcagatttatattgaaggtatacctttggtact |
31929436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 87 - 379
Target Start/End: Complemental strand, 31897767 - 31897478
Alignment:
| Q |
87 |
agtaaccaagagagtgaggagaagggtgattaaatggagaagattaataactcgtgagatccatctaacgtggaaatatgtgcctagaaacaaaattgaa |
186 |
Q |
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| T |
31897767 |
agtaaccaagagactgaggagaagggtgattaaatggagaagattactaactcatgagatccatctaaagtgaagatatgtgcttagaaacaaaattgaa |
31897668 |
T |
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| Q |
187 |
tctcttaaattaaatnnnnnnnnttataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctaccataaaggatcc |
286 |
Q |
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| T |
31897667 |
tctcttaaaataaa--ataaaaatgataattgagatccatgaaatacatatgtttgtatgtaaacaagaataaa-tacattgttctaccacaaaggatcc |
31897571 |
T |
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| Q |
287 |
atgctaaggataaattaagaattgcatatatgtatataataaatgaatgtaaattaagttgcagatttatattgaaggtatacctttgctact |
379 |
Q |
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| T |
31897570 |
atgctaaggataatttaagaattggatataagtatataataaatgaatgtaaatcaagttgcagatttatatcgaatgtatacctttggtact |
31897478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 98 - 379
Target Start/End: Complemental strand, 31863536 - 31863251
Alignment:
| Q |
98 |
gagtgaggagaagggtgattaaatggagaagattaataactcgtgagatccatctaacgtggaaatatgtgcctagaaacaaaattgaatctcttaaatt |
197 |
Q |
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| T |
31863536 |
gagtgaggagaagggtgattaaacggagaagattactaactcgtgagatcaatctaaagtgaagatatgtgttcagaaaaaaaattgaatcccttaaaat |
31863437 |
T |
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| Q |
198 |
aaatnnnnnnnnttataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctaccataaaggatccatgctaaggat |
297 |
Q |
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| T |
31863436 |
aaataaaaaaa-ttatagttttaatccatgaaatatatatgttcgtatgtaaacaagaataaa-tacattgttctaccataaaggattcatgctaaggat |
31863339 |
T |
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| Q |
298 |
aaattaagaattgcatatatgtatataat-----aaatgaatgtaaat-taagttgcagatttatattgaaggtatacctttgctact |
379 |
Q |
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| T |
31863338 |
aaattaagaactgaatattagtatataataaaaaaaatgaatgtaaatcaaagctgtagatttatattgatgggatacctttggtact |
31863251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 31842200 - 31842122
Alignment:
| Q |
123 |
gagaagattaataactcgtgagatccatctaacgtggaaatatgtgcctagaaacaaaattgaatctcttaaattaaat |
201 |
Q |
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| T |
31842200 |
gagaggattattaacgcgtgacatccatctaaagtgaagatatgtgctaagaaacgaaattgaatctcttaaaataaat |
31842122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 23950829 - 23950781
Alignment:
| Q |
258 |
aaaatacattgttctaccataaaggatccatgctaaggataaattaaga |
306 |
Q |
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| T |
23950829 |
aaaatatattattctaacataaatgatccatactaaggataaattaaga |
23950781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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