View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4294_high_19 (Length: 280)

Name: NF4294_high_19
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4294_high_19
NF4294_high_19
[»] chr2 (20 HSPs)
chr2 (12-264)||(39137558-39137810)
chr2 (12-137)||(39487692-39487817)
chr2 (68-190)||(39414887-39415009)
chr2 (12-236)||(39473510-39473734)
chr2 (42-236)||(39215380-39215574)
chr2 (119-236)||(39459077-39459194)
chr2 (141-237)||(39152431-39152527)
chr2 (12-136)||(39415025-39415149)
chr2 (148-236)||(39397950-39398038)
chr2 (147-236)||(39137735-39137824)
chr2 (163-236)||(39222754-39222827)
chr2 (127-236)||(39369941-39370050)
chr2 (148-235)||(39468193-39468280)
chr2 (161-236)||(44895624-44895699)
chr2 (12-106)||(39422021-39422115)
chr2 (12-85)||(39458991-39459064)
chr2 (172-230)||(39222406-39222464)
chr2 (12-85)||(39369847-39369920)
chr2 (172-236)||(39161720-39161784)
chr2 (172-236)||(39207410-39207474)
[»] chr7 (2 HSPs)
chr7 (12-264)||(19807508-19807760)
chr7 (147-236)||(19807685-19807774)
[»] chr5 (1 HSPs)
chr5 (72-166)||(33560771-33560865)
[»] chr6 (1 HSPs)
chr6 (158-236)||(16113163-16113241)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 39137558 - 39137810
Alignment:
Q  12 aagaagcattttgagagccgacagaagcagctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaag 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39137558 aagaagcattttgagagccgacagaagcagcttgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaag 39137657  T
Q  112 tacacgtgaaggattttgaatcaaaggatgaggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggattt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39137658 tacacgtgaaggattttgaatcaaaggatgaggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggattt 39137757  T
Q  212 caaatcaaaagagaagcaacttgaaagccaagtcgaggattacaaatcaaaag 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39137758 caaatcaaaagagaagcaacttgaaagccaagtcgaggattacaaatcaaaag 39137810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 39487817 - 39487692
Alignment:
Q  12 aagaagcattttgagagccgacagaagcagctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaag 111  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||    
T  39487817 aagaagcattctgagagccgacagaaggagctcgaagcacaagaaaagcaacatgaagaacaaatgaaggagttccagtcaaaagaggaggaattcagag 39487718  T
Q  112 tacacgtgaaggattttgaatcaaag 137  Q
     |||||||||||| ||| || |||||    
T  39487717 gacacgtgaaggagtttaaaacaaag 39487692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 190
Target Start/End: Complemental strand, 39415009 - 39414887
Alignment:
Q  68 agaacaaatgaaggagttccagtcaaaagaagaggaattcaaagtacacgtgaaggattttgaatcaaaggatgaggagttcgaagatcaagttaaggag 167  Q
    ||||||||||||||||||||| |||||||| | |||||||||||  || |||||||| |||||||||||||| ||||||||| ||| ||||||||||||     
T  39415009 agaacaaatgaaggagttccactcaaaagagggggaattcaaaggtcaagtgaaggagtttgaatcaaaggaggaggagttcaaaggtcaagttaaggaa 39414910  T
Q  168 ctcaaatcaaaaaagaagcaatt 190  Q
    |||||||||||| ||||||||||    
T  39414909 ctcaaatcaaaagagaagcaatt 39414887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 39473734 - 39473510
Alignment:
Q  12 aagaagcattttgagagccgacagaagcagctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaa-a 110  Q
    ||||||||||| ||||||| || |||| |||||||| || |||||||| ||| | | | |||| |||||||||||||||||||||| |||||||| || |    
T  39473734 aagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaaca 39473635  T
Q  111 gtacacgtgaaggattttgaatcaaaggatgaggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaa-gttgaggat 209  Q
    || || |||||||| ||| || | ||| | ||||| ||| ||| ||  ||||||||||| |||| |||||||||||||||  |||||||| ||||||||     
T  39473634 gt-caagtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggagcttaaataaaaaaagaagcaatt-taaaaccaaggttgaggaa 39473537  T
Q  210 ttcaaatcaaaagagaagcaacttgaa 236  Q
    |||||||||| || ||||||| |||||    
T  39473536 ttcaaatcaatagcgaagcaatttgaa 39473510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 236
Target Start/End: Original strand, 39215380 - 39215574
Alignment:
Q  42 ctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaagtacacgtgaaggattttgaatcaaaggatg 141  Q
    ||||||||  ||||||||||||  |||||||||| ||||||||||||||||||| | |||||||| ||||  || ||| ||||  |||||||||| || |    
T  39215380 ctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatcaaatgagg 39215479  T
Q  142 aggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||| ||| |||  |  |||||||||||||  | ||||||||||||||| ||||  |||||||||   ||  ||||||||||||||||| |||||    
T  39215480 aggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagacaagttgagagctttgaatcaaaagagaagcaatttgaa 39215574  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 39459077 - 39459194
Alignment:
Q  119 gaaggattttgaatcaaaggatgaggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatca 218  Q
    |||||| |||||||||||  | ||||| ||| ||| ||| |||||| ||||||| ||||||||||||||||| |||| |||  ||||||| ||||||| |    
T  39459077 gaaggagtttgaatcaaataaggaggaattcaaaggtcaggttaagcagctcaattcaaaaaagaagcaatttgaaagccagtttgaggacttcaaatta 39459176  T
Q  219 aaagagaagcaacttgaa 236  Q
    |||||||||||| |||||    
T  39459177 aaagagaagcaatttgaa 39459194  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 39152431 - 39152527
Alignment:
Q  141 gaggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaaa 237  Q
    ||||| ||| ||| ||| ||||||||||| ||||||||||||||| |||| |||| ||| |||||||| |||||| |||||||||||||| ||||||    
T  39152431 gaggaattcaaaggtcaggttaaggagcttaaatcaaaaaagaagaaatttgaaatccaggttgaggacttcaaaacaaaagagaagcaatttgaaa 39152527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 39415149 - 39415025
Alignment:
Q  12 aagaagcattttgagagccgacagaagcagctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaag 111  Q
    ||||||||||| || |||| || |||| |||| ||| || ||||||| ||||   |||||| |||||| ||||||||||||||||| |||||| ||||||    
T  39415149 aagaagcatttcgaaagccaactgaaggagcttgaatcaaaagaaaatcaattcaaagaacgaatgaaagagttccagtcaaaagaggaggaactcaaag 39415050  T
Q  112 tacacgtgaaggattttgaatcaaa 136  Q
     ||| |||||||| |||||||||||    
T  39415049 gacaagtgaaggagtttgaatcaaa 39415025  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 39398038 - 39397950
Alignment:
Q  148 tcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||||| || ||||||||||||| ||| | |||| ||||| || |||| ||||||||||||||||||||||||||| |||||| |||||    
T  39398038 tcgaaggtcgagttaaggagctcgaattacaaaataagcactttgaaagccaagttgaggatttcaaatcaaaagataagcaaattgaa 39397950  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 39137735 - 39137824
Alignment:
Q  147 ttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||||| | |||||| ||||  ||||||||||| |||||||| | |||| |||||| ||||||| ||||||||||||||||||| |||||    
T  39137735 ttcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaaagccaagtcgaggattacaaatcaaaagagaagcaaattgaa 39137824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 39222754 - 39222827
Alignment:
Q  163 aggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||| ||| |||||||||||||||| ||||||| |||||| ||||| || |||||||||||||||||| |||||    
T  39222754 aggaactcgaatcaaaaaagaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaatttgaa 39222827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 39369941 - 39370050
Alignment:
Q  127 ttgaatcaaaggatgaggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaa 226  Q
    ||||||||||||| ||||| || |||| || |||||||||| |||| ||| ||| ||||||||| |||| |||||| ||| | |||||||| ||||| ||    
T  39369941 ttgaatcaaaggaggaggaatttgaaggtcgagttaaggagttcaagtcagaaaggaagcaatttgaaacccaagtcgagcacttcaaatcgaaagaaaa 39370040  T
Q  227 gcaacttgaa 236  Q
    |||| |||||    
T  39370041 gcaatttgaa 39370050  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 39468193 - 39468280
Alignment:
Q  148 tcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttga 235  Q
    |||||| || ||||||||||||| |||||||||||||  | || || |  |||||||||||||||||||||||||| |||||| ||||    
T  39468193 tcgaaggtcgagttaaggagctcgaatcaaaaaagaaatattttgacagtcaagttgaggatttcaaatcaaaagataagcaatttga 39468280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 44895699 - 44895624
Alignment:
Q  161 taaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||||||||| ||||| |||||||||  || |||| |||||||||||  |||||||||||||||||||| ||||||    
T  44895699 taaggagctcgaatcagaaaagaagcgttttgaaagccaagttgaggccttcaaatcaaaagagaagcagcttgaa 44895624  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 39422115 - 39422021
Alignment:
Q  12 aagaagcattttgagagccgacagaagcagctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaatt 106  Q
    |||||||||||||| ||||||| |||| | |||||| ||  ||||||| |||  || | ||||||||||||||||| ||||||||| ||||||||    
T  39422115 aagaagcattttgaaagccgactgaaggatctcgaatcaatagaaaagaaattcgatggacaaatgaaggagttcctgtcaaaagaggaggaatt 39422021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 39458991 - 39459064
Alignment:
Q  12 aagaagcattttgagagccgacagaagcagctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagtt 85  Q
    ||||||||||| |||||| | | |||| |||||||| || |||||||||||| ||||| |||| ||||||||||    
T  39458991 aagaagcatttcgagagcaggctgaaggagctcgaatcaaaagaaaagcaatttgaaggacaagtgaaggagtt 39459064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 39222406 - 39222464
Alignment:
Q  172 aatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaa 230  Q
    |||| ||||||||||| || ||||| ||||| ||||| |||||||||||||||| ||||    
T  39222406 aatccaaaaagaagcattttgaaaatcaagtggaggagttcaaatcaaaagagaggcaa 39222464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 39369847 - 39369920
Alignment:
Q  12 aagaagcattttgagagccgacagaagcagctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagtt 85  Q
    ||||||||| | |||||| ||| | || |||||||| || |||||||||||| ||||| ||||| |||||||||    
T  39369847 aagaagcatatcgagagcagactgcaggagctcgaatcaaaagaaaagcaatttgaaggacaaaagaaggagtt 39369920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 39161720 - 39161784
Alignment:
Q  172 aatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||||||||| ||||| || ||||  ||||||||||| |||||||||||| |||| ||| |||||    
T  39161720 aatcaaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaa 39161784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 39207474 - 39207410
Alignment:
Q  172 aatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||||||||| ||||| || ||||  ||||||||||| |||||||||||| |||| ||| |||||    
T  39207474 aatcaaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaa 39207410  T

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Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 19807508 - 19807760
Alignment:
Q  12 aagaagcattttgagagccgacagaagcagctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaag 111  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807508 aagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaag 19807607  T
Q  112 tacacgtgaaggattttgaatcaaaggatgaggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggattt 211  Q
     |||||||||||||||||||||||||||||||| |||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||| ||    
T  19807608 cacacgtgaaggattttgaatcaaaggatgaggggttcgaaggtcgagttaaggagttcaaataaaaaaagaagcaattcgaaaaccaagttgaggactt 19807707  T
Q  212 caaatcaaaagagaagcaacttgaaagccaagtcgaggattacaaatcaaaag 264  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19807708 caaatcaaaagagaagcaacttgaaagccaagtcgaggaatacaaatcaaaag 19807760  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 19807685 - 19807774
Alignment:
Q  147 ttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||||| | |||||| ||||  ||||||||||| |||||||| | |||| |||||| ||||| | ||||||||||||||| ||| |||||    
T  19807685 ttcgaaaaccaagttgaggacttcaaatcaaaagagaagcaacttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaa 19807774  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 33560771 - 33560865
Alignment:
Q  72 caaatgaaggagttccagtcaaaagaagaggaattcaaagtacacgtgaaggattttgaatcaaaggatgaggagttcgaagatcaagttaagga 166  Q
    |||||||||||| || |||||||||| ||| ||||||||| ||| |||||||| ||| ||||||| || ||||| |||||||| ||||| |||||    
T  33560771 caaatgaaggagctcgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaaagaggaggaattcgaagaacaagtgaagga 33560865  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 16113163 - 16113241
Alignment:
Q  158 agttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaacttgaa 236  Q
    |||||||||| || |||||||||| ||||| || |||| |||||||||| ||||||||||||| || |||||| |||||    
T  16113163 agttaaggagatcgaatcaaaaaataagcatttggaaagccaagttgagtatttcaaatcaaacgataagcaatttgaa 16113241  T

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