View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_high_24 (Length: 259)
Name: NF4294_high_24
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 39824822 - 39825070
Alignment:
| Q |
1 |
atcgacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatccatactttcatatataatatgattaatctttct |
100 |
Q |
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| T |
39824822 |
atcgacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatccatactttcatatataatatgattaatctttct |
39824921 |
T |
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| Q |
101 |
aataaattaatatggcttgtttatatgttgtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttgaat |
200 |
Q |
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| T |
39824922 |
aataaattaatatagcttgtttatatgttgtagtctttctatattggaggtggagccccactgtcagtaccttccggattcgagcctcgaatccttgaat |
39825021 |
T |
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| Q |
201 |
ctgcatttaatgtaaggaaactaacaaacaacttcactatgtgtctgtg |
249 |
Q |
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| T |
39825022 |
ctgcatttaatgtaaggaaactaacaaacaacttcactatgtgtctgtg |
39825070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 39804788 - 39805029
Alignment:
| Q |
4 |
gacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatccatactttcatatataatatgattaatctttctaat |
103 |
Q |
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| T |
39804788 |
gacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatcaatacctttatatataatacgatcaatctttctaat |
39804887 |
T |
|
| Q |
104 |
aaattaatatggcttgtttatatgttgtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttgaatctg |
203 |
Q |
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| T |
39804888 |
aaattaatatggcttgtttatatgttgtagtctttctatattggaggtggagccccactgtcggtactttccggattcgagcctcgaatccttgaatctg |
39804987 |
T |
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| Q |
204 |
catttaatgtaaggaaactaacaaacaacttcactatgtgtc |
245 |
Q |
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| T |
39804988 |
catttaatgtaaggaaactaacaaacaacttcactacgtgtc |
39805029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 39813316 - 39813562
Alignment:
| Q |
4 |
gacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatccatactttcatatataatatgattaatctttctaat |
103 |
Q |
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| T |
39813316 |
gacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatcaatacctttatatataatacgattaatctttcgaat |
39813415 |
T |
|
| Q |
104 |
aaattaatatggcttgtttatatgttgtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttgaatctg |
203 |
Q |
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| T |
39813416 |
gaattaatatggcttgtttatatgttgtagtctttctatattggaggaggagctccagtgtcggtactttccggattcgagcctcgaatccttgaatctg |
39813515 |
T |
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| Q |
204 |
catttaatgtaaggaaactaacaaacaacttcactatgtgtctgtgc |
250 |
Q |
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| T |
39813516 |
catttaatgtaaggaaactaacaaacaattttactatgtgtcagtgc |
39813562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 39921092 - 39921334
Alignment:
| Q |
4 |
gacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatccatactttcatatataatatgattaatctttctaat |
103 |
Q |
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||||| || ||||||||| |||||||||||||||||||||||| | |||||||||||| |||| || || ||||||||| ||||||||||| ||||| |
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| T |
39921092 |
gacccctcagagagtttgggaattggtattttccaggtatatacaagcatttgtataagcaat----acctttatatataatttgattaatcttgctaat |
39921187 |
T |
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| Q |
104 |
aaattaa----tatggcttgtttatatgtt-gtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttga |
198 |
Q |
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| T |
39921188 |
ccatttaatgatatggtttgtttatatgtttgtagtctttctatattggaggaggagctccagtgtcggtattttccggattcgagcctcgaatccttga |
39921287 |
T |
|
| Q |
199 |
atctgcatttaatgtaaggaaactaacaaacaacttcactatgtgtc |
245 |
Q |
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| T |
39921288 |
atctgcatttaatgtaaggaaacaaacaaacaacttcactatgtgtc |
39921334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 39909773 - 39910015
Alignment:
| Q |
4 |
gacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatccatactttcatatataatatgattaatctttctaat |
103 |
Q |
| |
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| T |
39909773 |
gacccctcagagagtttgggaattggtattttccaggtatatacaagcatttgtataatcaat----acctttatatataatttgattaatgttgctaat |
39909868 |
T |
|
| Q |
104 |
aaattaa----tatggcttgtttatatgtt-gtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttga |
198 |
Q |
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||| | ||||| | ||||| ||||| ||||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||| ||||||||| |
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| T |
39909869 |
ccatttaatgatatggttggtttacatgtttgtagtcattctatattggaggaggagctccagtgtcggtattttccggattcgagcctcaaatccttga |
39909968 |
T |
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| Q |
199 |
atctgcatttaatgtaaggaaactaacaaacaacttcactatgtgtc |
245 |
Q |
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| T |
39909969 |
atccgcatttaatgtaaggaaactaacaaacaacttcactatgtgtc |
39910015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 39882404 - 39882632
Alignment:
| Q |
4 |
gacccatccgagagtttgagaattggtattttccaggtatatatatgcatttgtataatcaatccatactttcatatataatatgattaatctttctaat |
103 |
Q |
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||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||| |||| || || ||||||| | ||||||||||| ||||| |
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| T |
39882404 |
gacccctcagagagtttgagaattggtattttccaggtatatacaagcatttgcataaccaat----acctttatatatagtttgattaatcttgctaat |
39882499 |
T |
|
| Q |
104 |
aaattaa----tatggcttgtttatatgtt-gtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttga |
198 |
Q |
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| T |
39882500 |
ccattaaatgatatgtttgctttacatgtttgtagtctttctatattggaggaggagctccattatcagtactttccggattcgagcatcgaatccttga |
39882599 |
T |
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| Q |
199 |
atctgcatttaatgtaaggaaactaacaaacaa |
231 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
39882600 |
atcggcatttaatgtaaggaaactaacaaacaa |
39882632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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