View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_high_30 (Length: 225)
Name: NF4294_high_30
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 31234589 - 31234786
Alignment:
| Q |
17 |
ataaatttggtaatcaaatttggcaactctacggttagcgactaaattagagatagacaggcccattcttgggggtgtgcaaacggttcaaccgagctgg |
116 |
Q |
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| T |
31234589 |
ataaatttggtaatcaaatttgacaactctacggttagcgactaaattagagatagacaggcccattcttgggggtgtgcaaacggttcaaccgagctgg |
31234688 |
T |
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| Q |
117 |
gccacccaaaaagacgggactcaaaaactaattatagtcaatacgtgtctttgtttcttctttcttccaacaacaacactacttctttgttcatctca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
31234689 |
gccacccaaaaagacgggactcaaaaactaattatagtcaatacatgtctttgtttcttctttcttccaacaacaacattacttctttgttcttctca |
31234786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 31243726 - 31243923
Alignment:
| Q |
17 |
ataaatttggtaatcaaatttggcaactctacggttagcgactaaattagagatagacaggcccattcttgggggtgtgcaaacggttcaaccgagctgg |
116 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||| |
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| T |
31243726 |
ataaatttggtaatcaaatttaacaactctacggttagcgactaaattagagatagacaggcccattctttgggatgtggaaacggttcaatcgagctgg |
31243825 |
T |
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| Q |
117 |
gccacccaaaaagacgggactcaaaaactaattatagtcaatacgtgtctttgtttcttctttcttccaacaacaacactacttctttgttcatctca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
31243826 |
gccacccaaaaagacgggactcaaaaactaattatagtcaatacatgtctttgtttcttctttcttccagcaacaacactacttctttgttcttctca |
31243923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 32055874 - 32055911
Alignment:
| Q |
167 |
ttgtttcttctttcttccaacaacaacactacttcttt |
204 |
Q |
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| T |
32055874 |
ttgtttcttctttcctccaacaacaacactgcttcttt |
32055911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 4207606 - 4207559
Alignment:
| Q |
167 |
ttgtttcttctttcttccaacaacaacactacttctttgttcatctca |
214 |
Q |
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|||||||||||||||||||||||||| || |||||||| ||| ||||| |
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| T |
4207606 |
ttgtttcttctttcttccaacaacaaaaccacttctttcttcttctca |
4207559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 5971981 - 5971933
Alignment:
| Q |
166 |
tttgtttcttctttcttccaacaacaacactacttctttgttcatctca |
214 |
Q |
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||||||||||||||||||||| | |||||||| |||||| ||| ||||| |
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| T |
5971981 |
tttgtttcttctttcttccaatagcaacactatttctttcttcttctca |
5971933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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