View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_low_1 (Length: 730)
Name: NF4294_low_1
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 67 - 714
Target Start/End: Original strand, 36330073 - 36330720
Alignment:
| Q |
67 |
cattttagattcaaatcttcttactaataatacatggtcatcaacttaacaaacaaattaaagtttgacttgtaaaatttaaaagcacccaagtatgtta |
166 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330073 |
cattttagattcaaatcttcttactaataatacatggtcatcaacttaacatacaaattaaagtttgacttgtaaaatttaaaagcacccaagtatgtta |
36330172 |
T |
|
| Q |
167 |
aaccctaatgagttaacttcataaatcaatgttgtcaaactcaattgtaaacaagatcattaccttgttaagtctagaaccatcatttctatgaggttcc |
266 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
36330173 |
aaccctaatgagttaacttcacaaatcaatgttgtcaaactcaattgtaaacaacatcattaccttgttaagtctagaaccatcatctctatgagcttcc |
36330272 |
T |
|
| Q |
267 |
agtactagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaa |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36330273 |
agtactagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaa |
36330372 |
T |
|
| Q |
367 |
aggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330373 |
aggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatacttttttgatataacatatgctaccttcctttctaccttggc |
36330472 |
T |
|
| Q |
467 |
ttgatcagcctctggaagtggtgtatgcatagttctagcattcttctcaattgattgaaccctaatctttagtttattgtgatcaacaaaatttggatta |
566 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36330473 |
ttgatcagcctctggaagtggtgtatgcatagttctaccattcttctcaattgattgaaccctaatctttagtttattgtgatcaacaaaatttggatta |
36330572 |
T |
|
| Q |
567 |
agaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactaggatcaaaagcatcactcatcatcaacttcttattctctgcattac |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36330573 |
agaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactaggatcaaaagcatcactcatcatcaacttcttattctctgcattac |
36330672 |
T |
|
| Q |
667 |
cttgaaaagtctcagtaggcataccagtaattccttgtatcatcctca |
714 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
36330673 |
cttgaaaagtctcagtaggcataccagtaattccttctatcatcctca |
36330720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 270 - 504
Target Start/End: Original strand, 44369379 - 44369613
Alignment:
| Q |
270 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaagg |
369 |
Q |
| |
|
||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||| |
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| T |
44369379 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatctgtcttttcatcaaagt |
44369478 |
T |
|
| Q |
370 |
atatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttg |
469 |
Q |
| |
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| |||| | || || || ||| ||||||||| || || |||||||||| || | || ||||| ||| || ||||||||||| ||||| ||||| |
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| T |
44369479 |
acttagtaggagcctccctatttttctgaataaggggttgccactttgtgacttgttccttagatatttgatacgccaccttcctttccaccttcgcttg |
44369578 |
T |
|
| Q |
470 |
atcagcctctggaagtggtgtatgcatagttctag |
504 |
Q |
| |
|
||| |||| ||||||||||| ||| | |||||||| |
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| T |
44369579 |
atctgcctttggaagtggtgcatgaacagttctag |
44369613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 310 - 518
Target Start/End: Original strand, 52929484 - 52929692
Alignment:
| Q |
310 |
taaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgcatctctgtttgtctgaataaaaggctg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| | | ||| || || || ||| ||||||||| | || |
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|
| T |
52929484 |
taaattcagaagctatagctcctatagttgaaaaccctagatctatcttttcatcaaagtacacagtaagagcctccctatttctctgaataatggattg |
52929583 |
T |
|
| Q |
410 |
atactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattc |
509 |
Q |
| |
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|| ||||||| || || |||||||| |||| || ||||||||||||||||| |||||||| |||| ||||||||||| ||| | |||||||| | | |
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| T |
52929584 |
ccaccttgtgacttgtttctttgatatttcatacgccaccttcctttctacctttgcttgatctgcctttggaagtggtgcatgaacagttctagaacta |
52929683 |
T |
|
| Q |
510 |
ttctcaatt |
518 |
Q |
| |
|
||||||||| |
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|
| T |
52929684 |
ttctcaatt |
52929692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 270 - 504
Target Start/End: Complemental strand, 20238098 - 20237864
Alignment:
| Q |
270 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaagg |
369 |
Q |
| |
|
||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||| |
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|
| T |
20238098 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatctgtcttttcatcaaagt |
20237999 |
T |
|
| Q |
370 |
atatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttg |
469 |
Q |
| |
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| |||| | || || || ||| ||||||||| || || |||||||||| || | || ||||| ||| || ||||||||||| ||||| ||||| |
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|
| T |
20237998 |
acttagtaggagcctccctatttttctgaataaggggttgccactttgtgacttgttccttagatatttgatacgccaccttcctttccaccttcgcttg |
20237899 |
T |
|
| Q |
470 |
atcagcctctggaagtggtgtatgcatagttctag |
504 |
Q |
| |
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||| |||| ||||||||||| ||| | |||||||| |
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|
| T |
20237898 |
atctgcctttggaagtggtgcatgaacagttctag |
20237864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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