View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_low_10 (Length: 389)
Name: NF4294_low_10
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 25333120 - 25333294
Alignment:
| Q |
32 |
cttgttgcttctctatacaaacaattttaccattgcaacattatcttaacgaaatcaaatgaagatcaactcttgagggtaaacttcgatccatcaaacc |
131 |
Q |
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| T |
25333120 |
cttgttgcttctatatacaaacaattttaccattgcaacattatcttaacgaaatcaaatgaagatcaactcttgagggtaaacttcgatccatcaaacc |
25333219 |
T |
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| Q |
132 |
tcaaccaatttgttacaaacttttgctgattttgtaatacacgattaccttaaaaactttctaatatgtacaatc |
206 |
Q |
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| T |
25333220 |
tcaactaatgtgttacaaaactttggtgattttatattacatgatcaccttaaaaactttataatatgtacaatc |
25333294 |
T |
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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 25333365 - 25333495
Alignment:
| Q |
242 |
ccatcaaccaaaatcatgtccttttactcatcctaaaaccgaacaaaactgacctccataaataacagtactattaatgtgacatatgaatatcaaagag |
341 |
Q |
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| T |
25333365 |
ccatcaacaaaaatcatgtccttttactcatccaaaaaccaaacaaaaatgacctccataaatatcagtaccatttatgtgagatatgaatatcaaagag |
25333464 |
T |
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| Q |
342 |
tataaaaaccgtagggctcacagaacagaag |
372 |
Q |
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| T |
25333465 |
tataaaaaacatagatctcacagaacagaag |
25333495 |
T |
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